clusterdepth.jl
Science Score: 64.0%
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✓CITATION.cff file
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✓codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 4 DOI reference(s) in README -
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✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
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Low similarity (10.5%) to scientific vocabulary
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Repository
Basic Info
- Host: GitHub
- Owner: s-ccs
- License: mit
- Language: Julia
- Default Branch: main
- Size: 4.61 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 1
- Open Issues: 2
- Releases: 5
Metadata Files
README.md
ClusterDepth
Fast implementation (~>100x faster than R/C++) of the ClusterDepth multiple comparison algorithm from Frossard and Renaud Neuroimage 2022
This is especially interesting to EEG signals. Currently only acts on a single channel/timeseries. Multichannel as discussed in the paper is the next step.
Quickstart
julia
using ClusterDepth
pval_corrected = clusterdepth(erpMatrix; τ=2.3,nperm=5000)
FWER check
We checked FWER for troendle(...) and clusterdepth(...) (link to docs)
For clustedepth we used 5000 repetitions, 5000 permutations, 200 tests. |simulation|noise|uncorrected|type| |---|---|---|---| |clusterdepth|white|1.0|0.0554| |clusterdepth|red|0.835|0.0394| |troendle|white|XX|XX| |troendle|red|XX|XX|
Uncorrected should be 1 - it is very improbable, than none of the 200 tests in one repetition is not significant (we expect 5% to be).
Corrected should be 0.05 (CI-95 [0.043,0.0564])
* red noise introduces strong correlations between individual trials, thus makes the tests correlated while following the H0.
Citing
Algorithm published in https://doi.org/10.1016/j.neuroimage.2021.118824 - Frossard & Renaud 2022, Neuroimage
Please also cite this toolbox: 
Some functions are inspired by R::permuco, written by Jaromil Frossard. Note: Permuco is GPL licensed, but Jaromil Frossard released the relevant clusteterdepth functions to me under MIT. Thereby, this repository can be licensed under MIT.
1
Owner
- Name: s-ccs
- Login: s-ccs
- Kind: organization
- Repositories: 7
- Profile: https://github.com/s-ccs
Citation (CITATION.bib)
@misc{ClusterDepth.jl,
author = {Benedikt V. Ehinger,Maanik Marathe},
title = {ClusterDepth.jl},
url = {https://github.com/behinger/ClusterDepth.jl},
version = {v0.1.1},
year = {2023},
month = {1}
}
GitHub Events
Total
- Release event: 1
- Issue comment event: 3
- Push event: 6
- Pull request event: 2
- Create event: 1
Last Year
- Release event: 1
- Issue comment event: 3
- Push event: 6
- Pull request event: 2
- Create event: 1
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| behinger (s-ccs 001) | b****r@v****e | 55 |
| maanikmarathe | 6****e | 4 |
| CompatHelper Julia | c****y@j****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 4
- Total pull requests: 7
- Average time to close issues: about 7 hours
- Average time to close pull requests: 2 months
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 5.25
- Average comments per pull request: 0.14
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: less than a minute
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- behinger (3)
- JuliaTagBot (1)
Pull Request Authors
- behinger (5)
- maanikmarathe (2)
- github-actions[bot] (1)
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Dependencies
- actions/checkout v2 composite
- codecov/codecov-action v2 composite
- julia-actions/cache v1 composite
- julia-actions/julia-buildpkg v1 composite
- julia-actions/julia-docdeploy v1 composite
- julia-actions/julia-processcoverage v1 composite
- julia-actions/julia-runtest v1 composite
- julia-actions/setup-julia v1 composite
- JuliaRegistries/TagBot v1 composite