loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
41 of 150 committers (27.3%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (15.4%) to scientific vocabulary
Keywords
data-sharing
database
hacktoberfest
loris
neuroimaging
neuroinformatics
science
Keywords from Contributors
bids
converter
simpleitk
nibabel
dataloader
bruker
network-simulation
hacking
interactive
sequences
Last synced: 6 months ago
·
JSON representation
·
Repository
LORIS is a web-accessible database solution for longitudinal multi-site studies.
Basic Info
Statistics
- Stars: 155
- Watchers: 21
- Forks: 183
- Open Issues: 511
- Releases: 107
Topics
data-sharing
database
hacktoberfest
loris
neuroimaging
neuroinformatics
science
Created about 15 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
Contributing
License
Code of conduct
Citation
README.md
LORIS Neuroimaging Platform
LORIS (Longitudinal Online Research and Imaging System) is a self-hosted web application that provides data- and project-management for neuroimaging research. LORIS makes it easy to manage large datasets including behavioural, clinical, neuroimaging and genetic data acquired over time or at different sites.
- Try the LORIS demo instance at https://demo.loris.ca.
This Readme covers installation of LORIS version 27.0 on Ubuntu.
(CentOS Readme also available).
Please consult the Ubuntu Installation guide or CentOS Installation guide for more information. These installation instructions and more LORIS documentation for developers can also be found on the LORIS ReadTheDocs website.
Heroku
You can try LORIS on Heroku before installing it on your system. The project management and clinical data management functions of LORIS are available for experimenting with. Imaging functionality is not yet available.
Deploy and log in with username admin and the password that's set up during deployment via ClearDB.
Installation
Consult the Ubuntu Installation guide or CentOS Installation guide for more information.
Community
Get in touch
For questions and troubleshooting guidance beyond what is covered in our documentation, please subscribe to the LORIS Developers mailing list and email us there.
Support and GitHub Issues
For troubleshooting specific installation issues or errors, please see the Installation troubleshooting guide, and then contact us via the LORIS Developers mailing list. For bug reporting and new feature requests, please search and report via our GitHub Issues.
Please include details such as the version of LORIS you're using as well as information such as the OS you're using, your PHP and Apache versions, etc.
Contributing
We are very happy to get code contributions and features from the global LORIS community.
If you would like to contribute to LORIS development, please consult our Contributing Guide.
Powered by MCIN
LORIS is made by staff developers at the McGill Centre for Integrative Neuroscience, led by Alan Evans and Samir Das at The Neuro (Montreal Neurological Institute-Hospital).
Visit the LORIS website for the history of LORIS and our Technical Papers.
The original (pre-GitHub) LORIS development team from 1999-2010 included: Dario Vins, Alex Zijdenbos, Jonathan Harlap, Matt Charlet, Andrew Corderey, Sebastian Muehlboeck, James McKinney, and Samir Das.
Owner
- Name: ACElab
- Login: aces
- Kind: organization
- Location: Montreal, Quebec, Canada
- Website: http://mcin.ca/
- Repositories: 75
- Profile: https://github.com/aces
McGill Centre for Integrative Neuroscience (MCIN) - Alan C. Evans, Ph.D., Principal Investigator
Citation (CITATION.cff)
authors:
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family-names: Mathew
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-
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-
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-
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family-names: Teng
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-
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family-names: Caron
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-
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-
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Bhinder
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Raoult
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Le
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Remz
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Hasbini
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affiliation: "McGill Centre For Integrative Neuroscience"
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Mazaheri
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affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Kang
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-
affiliation: "McGill Centre For Integrative Neuroscience"
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-
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-
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family-names: Diallo
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-
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-
affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Morin
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-
affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Toussaint
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-
affiliation: "McConnell Brain Imaging Centre - McGill University"
family-names: Paiva
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-
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-
affiliation: "McGill Centre For Integrative Neuroscience"
family-names: Gaba
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family-names: Hoang
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-
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family-names: Bhembe
given-names: Vuyo
-
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family-names: Pham
given-names: Xuan Mai
-
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family-names: Chen
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-
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family-names: Ding
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-
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-
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-
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family-names: Khan
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-
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family-names: Evans
given-names: Alan C.
cff-version: "1.1.0"
identifiers:
-
type: url
value: "https://www.loris.ca"
doi: 10.5281/zenodo.5177111
license: "GPL-3.0"
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/aces/Loris"
title: "LORIS (Longitudinal Online Research and Imaging System)"
GitHub Events
Total
- Create event: 6
- Release event: 3
- Issues event: 339
- Watch event: 9
- Delete event: 4
- Member event: 2
- Issue comment event: 697
- Push event: 190
- Pull request review event: 720
- Pull request review comment event: 443
- Pull request event: 541
- Fork event: 12
Last Year
- Create event: 6
- Release event: 3
- Issues event: 339
- Watch event: 9
- Delete event: 4
- Member event: 2
- Issue comment event: 697
- Push event: 190
- Pull request review event: 720
- Pull request review comment event: 443
- Pull request event: 541
- Fork event: 12
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Dave MacFarlane | d****n@g****m | 2,112 |
| zia | z****s@g****m | 630 |
| Tara Campbell | t****l@g****m | 501 |
| Shen | k****n@g****m | 481 |
| Jkat | f****n@l****m | 478 |
| Rida Abou-Haidar | r****8 | 473 |
| Rathi | s****i@g****m | 388 |
| John Saigle | 4****e | 344 |
| jstirling91 | j****l@a****l | 335 |
| Dave MacFarlane | d****2@m****a | 316 |
| jstirling91 | j****1@g****m | 308 |
| Cécile Madjar | c****r@g****m | 255 |
| Laetitia Fesselier | l****r@m****a | 239 |
| Alex Ilea | a****v | 205 |
| xlecours | x****n@g****m | 177 |
| Evan McIlroy | e****y@g****m | 172 |
| stellarxo | s****e@h****m | 162 |
| MounaSafiHarab | m****b@g****m | 160 |
| nicolasbrossard | n****i@g****m | 160 |
| Zaliqa | z****i@m****a | 160 |
| Xavier Lecours | x****r@m****a | 150 |
| Gregory Luneau | g****n@g****m | 150 |
| maltheism | 1****m | 148 |
| Ted Strauss | t****s@g****m | 147 |
| Christine Rogers | r****s@b****a | 137 |
| nirtiac | c****g@m****a | 129 |
| olgatsib | o****b@g****m | 120 |
| Mia | m****a@g****m | 114 |
| Martin Weiss | m****7@g****m | 92 |
| Jordan Stirling | j****l@d****a | 86 |
| and 120 more... | ||
Committer Domains (Top 20 + Academic)
mail.mcgill.ca: 6
mcin.ca: 6
bic.mni.mcgill.ca: 4
mcgill.ca: 3
wpa069037.wireless.mcgill.ca: 1
wpa069162.wireless.mcgill.ca: 1
wpa069023.wireless.mcgill.ca: 1
dhcp56-202.mni.mcgill.ca: 1
buffalo.edu: 1
wpa069106.wireless.mcgill.ca: 1
vpn69162.vpn.mcgill.ca: 1
wpa068236.wireless.mcgill.ca: 1
wpa069048.wireless.mcgill.ca: 1
cecile.(none): 1
dhcp56-208.mni.mcgill.ca: 1
wpa069075.wireless.mcgill.ca: 1
wpa069083.wireless.mcgill.ca: 1
wpa069119.wireless.mcgill.ca: 1
huia.bic.mni.mcgill.ca: 1
dhcp56-213.mni.mcgill.ca: 1
wpa068246.wireless.mcgill.ca: 1
dhcp56-240.mni.mcgill.ca: 1
wpa160057.wireless.mcgill.ca: 1
wpa142074.wireless.mcgill.ca: 1
wpa142139.wireless.mcgill.ca: 1
dhcp56-201.mni.mcgill.ca: 1
affiliate.mcgill.ca: 1
wpa142031.wireless.mcgill.ca: 1
wpa069132.wireless.mcgill.ca: 1
wpa069203.wireless.mcgill.ca: 1
wpa069128.wireless.mcgill.ca: 1
wpa069122.wireless.mcgill.ca: 1
wpa069184.wireless.mcgill.ca: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 543
- Total pull requests: 960
- Average time to close issues: over 1 year
- Average time to close pull requests: about 2 months
- Total issue authors: 51
- Total pull request authors: 43
- Average comments per issue: 1.34
- Average comments per pull request: 1.21
- Merged pull requests: 559
- Bot issues: 0
- Bot pull requests: 13
Past Year
- Issues: 232
- Pull requests: 611
- Average time to close issues: 16 days
- Average time to close pull requests: 16 days
- Issue authors: 26
- Pull request authors: 26
- Average comments per issue: 0.64
- Average comments per pull request: 0.95
- Merged pull requests: 319
- Bot issues: 0
- Bot pull requests: 9
Top Authors
Issue Authors
- CamilleBeau (49)
- jeffersoncasimir (40)
- driusan (38)
- nicolasbrossard (37)
- ridz1208 (36)
- christinerogers (35)
- skarya22 (32)
- SantiagoTG (30)
- regisoc (28)
- kongtiaowang (21)
- racostas (17)
- MaximeMulder (17)
- charliehenrib (16)
- zaliqarosli (15)
- adamdaudrich (13)
Pull Request Authors
- driusan (173)
- kongtiaowang (172)
- skarya22 (98)
- jeffersoncasimir (61)
- ridz1208 (42)
- mohadesz (41)
- victori444 (28)
- CamilleBeau (28)
- regisoc (25)
- nicolasbrossard (24)
- laemtl (23)
- maximemulder (23)
- shonibare (22)
- GeorgeMurad (21)
- racostas (20)
Top Labels
Issue Labels
Bug (132)
27.0.0 - Bugs (102)
Proposal (86)
Category: Bug (81)
26.0.0-bugs (66)
Module: dataquery (34)
Priority: High (34)
Category: Feature (30)
State: Stale (27)
24.0.0-bugs (25)
25.0.0 - Bugs (22)
Category: Documentation (16)
Cleanup (14)
Priority: Wishlist (13)
Module: issue_tracker (13)
Area: UI (13)
Stale (12)
Language: PHP (11)
Beginner Friendly (11)
State: Discussion required (11)
Module: genomic_browser (10)
GSOC (10)
Language: Javascript (9)
Feature (8)
Critical to release (8)
Area: API (8)
Module: electrophysiology_browser (8)
Event: GSOC (8)
Multilingual (8)
Language: SQL (7)
Pull Request Labels
27.0.0 - Bugs (160)
Language: PHP (131)
26.0.0-bugs (64)
Passed manual tests (64)
Priority: High (52)
Language: SQL (50)
Module: dataquery (48)
Passed Manual Tests (48)
Language: Javascript (41)
Bug (38)
Category: Feature (34)
Priority: Projects (31)
Category: Bug (30)
RaisinBread (30)
Project: CCNA (29)
Project: C-BIG (24)
Difficulty: Simple (24)
Module: issue_tracker (24)
Cleanup (24)
Module: imaging_browser (22)
Critical to release (22)
Testing (22)
Module: instruments (22)
javascript (21)
Feature (20)
State: Needs work (20)
Difficuly: Trivial (20)
SQL (18)
Module: statistics (18)
dependencies (18)
Dependencies
modules/electrophysiology_browser/jsx/react-series-data-viewer/package.json
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- php-webdriver/webdriver dev-main development
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readthedocs/plugins/mkdocs-root-plugin/setup.py
pypi
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readthedocs/requirements.txt
pypi
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.github/workflows/loristest.yml
actions
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docker-compose.yml
docker
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modules/electrophysiology_browser/jsx/react-series-data-viewer/package-lock.json
npm
- 390 dependencies
package-lock.json
npm
- 930 dependencies