Science Score: 77.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 13 DOI reference(s) in README -
✓Academic publication links
Links to: pubmed.ncbi, ncbi.nlm.nih.gov, aps.org, acs.org -
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.0%) to scientific vocabulary
Keywords
Repository
Goslin is the Grammar on succinct lipid nomenclature.
Basic Info
- Host: GitHub
- Owner: lifs-tools
- License: other
- Language: ANTLR
- Default Branch: master
- Homepage: https://lifs-tools.github.io/goslin
- Size: 7.35 MB
Statistics
- Stars: 11
- Watchers: 5
- Forks: 2
- Open Issues: 15
- Releases: 4
Topics
Metadata Files
README.md
Goslin
Goslin is the Grammar on succinct lipid nomenclature.
Goslin defines multiple grammers compatible with ANTLRv4 for different sources of shorthand lipid nomenclature. This allows to generate parsers based on the defined grammars, which provide immediate feedback whether a processed lipid shorthand notation string is compliant with a particular grammar, or not.
Overview of Goslin and Tutorials
Goslin 2.0 supports the updated lipid shorthand nomenclature with new structural levels.
General information on Goslin is also available on the LIFS Tools website.
Citing Goslin
If you use Goslin or any of the specific implementations in your work, we kindly ask you to cite the original publication:
- D. Kopczynski et al.,https://lifs.isas.de/tools/goslin Goslin - A Grammar of Succinct Lipid Nomenclature, Analytical Chemistry, June 26th, 2020. doi:10.1021/acs.analchem.0c01690
If you are using any of the new features of Goslin 2.0, please cite the following, updated Goslin 2.0 publication:
- D. Kopczynski et al., Goslin 2.0 Implements the Recent Lipid Shorthand Nomenclature for MS-Derived Lipid Structures, Analytical Chemistry, April 11th, 2022. doi:10.1021/acs.analchem.1c05430
References
- D. Kopczynski, N. Hoffmann et al., Analytical Chemistry, April 11th, 2022
- D. Kopczynski, N. Hoffmann et al., Analytical Chemistry, June 26th, 2020
- D. Kopczynski, N. Hoffmann et al., Biorxiv, April 20th, 2020 (Preprint)
Related Projects
- This project
- C++ implementation
- C# implementation
- Java implementation
- Python implementation
- R implementation
- Webapplication and REST API
Test data
- testfiles/lipidmaps-names-Feb-10-2020.tsv - generated from LipidMAPS LMSDB export on Feb. 10th, 2020. Filtered all entries without an abbreviation.
- testfiles/swisslipids-names-Feb-10-2020.tsv - generated from Swiss Lipids (lipids table) export on Feb. 10th ,2020.
Short samples of lipid names used for testing of the implementations are available from the testfiles directory.
License
The Goslin grammars are licensed under the terms of the MIT license (see LICENSE).
Owner
- Name: Lipidomics Informatics for Life Sciences
- Login: lifs-tools
- Kind: organization
- Location: Germany
- Website: https://lifs-tools.org
- Repositories: 18
- Profile: https://github.com/lifs-tools
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Kopczynski
given-names: Dominik
orcid: https://orcid.org/0000-0001-5885-4568
- family-names: Hoffmann
given-names: Nils
orcid: https://orcid.org/0000-0002-6540-6875
- family-names: Peng
given-names: Bing
orcid: https://orcid.org/0000-0001-5006-7041
- family-names: Ahrends
given-names: Robert
orcid: http://orcid.org/0000-0003-0232-3375
title: "Goslin is the Grammar on succinct lipid nomenclature."
version: 1.1.2
date-released: 2020-06-26
identifiers:
- description: "Main Publication: Goslin: A Grammar of Succinct Lipid Nomenclature"
type: doi
value: "10.1021/acs.analchem.0c01690"
license: MIT
GitHub Events
Total
- Issues event: 3
- Delete event: 4
- Issue comment event: 1
- Push event: 28
- Pull request event: 12
- Create event: 3
Last Year
- Issues event: 3
- Delete event: 4
- Issue comment event: 1
- Push event: 28
- Pull request event: 12
- Create event: 3
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Dominik Kopczynski | d****i@t****e | 172 |
| dominik.kopczynski | d****i@i****e | 96 |
| Nils Hoffmann | n****n@i****e | 86 |
| Nils Hoffmann | 3****n | 28 |
| Renovate Bot | b****t@r****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 21
- Total pull requests: 15
- Average time to close issues: 8 months
- Average time to close pull requests: 4 months
- Total issue authors: 8
- Total pull request authors: 3
- Average comments per issue: 1.0
- Average comments per pull request: 0.47
- Merged pull requests: 4
- Bot issues: 1
- Bot pull requests: 10
Past Year
- Issues: 1
- Pull requests: 5
- Average time to close issues: 26 days
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 3
- Average comments per issue: 4.0
- Average comments per pull request: 0.2
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 4
Top Authors
Issue Authors
- nilshoffmann (11)
- dominik-kopczynski (7)
- DanielMKrause (1)
- Kev-Flores (1)
- keremw (1)
- meowcat (1)
- gbaquer (1)
- dernesa (1)
- renovate[bot] (1)
- JauntyJJS (1)
Pull Request Authors
- renovate[bot] (18)
- nilshoffmann (6)
- dependabot[bot] (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v2 composite
- actions/setup-java v2 composite
- gradle/gradle-build-action v1.5.0 composite