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https://github.com/jboulanger/imagej-macro

A collection of ImageJ1 macro

https://github.com/jboulanger/imagej-macro

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.7%) to scientific vocabulary
Last synced: 5 months ago · JSON representation

Repository

A collection of ImageJ1 macro

Basic Info
  • Host: GitHub
  • Owner: jboulanger
  • License: mit
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 3.1 MB
Statistics
  • Stars: 4
  • Watchers: 3
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 5 years ago · Last pushed 6 months ago
Metadata Files
Readme License

README.md

imagej-macro

This is a collection of ImageJ1 macro that we found useful for analysing images acquired on optical microscopes enabling the quantification of biological processes.

Requirement

  • We use Fiji (ImageJ 1.53c) to develop the macros https://imagej.net/Fiji.
  • Some macros use script parameters https://imagej.net/Script_parameters

Content

Click on the macro name to access the raw macro file that you can save on your computer or click on the description to access the documentation page.

|Macro Name | Description | |---|---| |Align_channels.ijm | Align Channels using beads | |Detect3DSpots.ijm |Detect and count spots in 3D | |Colocalization_Analysis.ijm| Colocalization in ROIs| |LocalColocalizationCoefficient.ijm| Local (Pearson & Overlap) colocalization coefficient | |GUVIntensityRegion.ijm|Analysis of intensity over time of GUVs with a region based approach| |GUVIntensityContours.ijm|Analysis of intensity over time of GUVs with a contour based approach| |FRAP_Measure.ijm| FRAP measurement with manual tracking | |Beads_FWHM.ijm|Measure the FWHM of fluorescent beads| |Convert_File.ijm|Convert files and apply simple transformation| |Export_Series.ijm|Export series from a multi-image container (LIF file)| |Cilia_Beat.ijm| Analysis of Cilia Beats| |Tile_Tools.ijm| Manipulate tiles|

Otherwise,
- browse the folder, - click the individual file you want to download, - press the raw button image - download the raw file (Ctrl-S) and open in in ImageJ/Fiji

Owner

  • Login: jboulanger
  • Kind: user

GitHub Events

Total
  • Push event: 10
Last Year
  • Push event: 9