https://github.com/jcmcnch/opedia

Science Score: 10.0%

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CITATION.cff file
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Links to: zenodo.org
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Low similarity (8.8%) to scientific vocabulary

Last synced: 6 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: jcmcnch
Language: Jupyter Notebook
Default Branch: master
Size: 368 MB

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Watchers: 2
Forks: 0
Open Issues: 0
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Fork of mdashkezari/opedia

Created almost 7 years ago · Last pushed almost 7 years ago

https://github.com/jcmcnch/opedia/blob/master/

[![DOI](https://zenodo.org/badge/118988572.svg)](https://zenodo.org/badge/latestdoi/118988572)

![ocean cube](https://github.com/mdashkezari/opedia/blob/master/cube.png)
# Opedia
Opedia is an open source database service to integrate, visualize, and analyze ocean datasets such as satellite data, in-situ observations, and model outputs. The project is supported by [Simons Foundation](https://www.simonsfoundation.org/).

# Documentation
https://cmap.readthedocs.io/en/latest/

# System Requirements
* [Anaconda Distribution Pyhton 3.7 -- 2.7](https://www.anaconda.com/download/)
* Make sure python is in system path.
* Additional python modules:
	- shapely
	- fiona
	- geopandas

# Installation
1.  **Set up database drivers (only required on macOS).**

	 install [homebrew](https://brew.sh/); a package manager for macOS.

	 ODBC driver provides the connection to the Opedia database.

	```
	$ /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
	$ brew install unixodbc
	$ brew install freetds --with-unixodbc
	```
2. **Install [Python Anaconda Distribution](https://www.anaconda.com/download/).**

Make sure python is added to the system path.  Anaconda distribution covers the majority of python modules used by Opedia. There are a few more required modules that need to be installed using the conda package manager; run the following commands to install them. Finally pip-install the opedia package itself.

	```
	$ conda install shapely
	$ conda install fiona
	$ conda install -c conda-forge geopandas

	$ pip install opedia
	```

Owner

Name: Jesse McNichol
Login: jcmcnch
Kind: user
Company: University of Southern California

Website: https://jcmcnch.github.io
Repositories: 6
Profile: https://github.com/jcmcnch

I am currently a postdoctoral scholar in Jed Fuhrman's lab at USC. Please see my website/CV for more information about my interests and experience.

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