Recent Releases of fair_gatk_mutect2
fair_gatk_mutect2 - 1.5.4
Features:
- fairbowtie2mapping up to 4.1.2
- Python
Published by tdayris over 1 year ago
fair_gatk_mutect2 - 1.5.1
Features:
- fairbowtie2mapping up to 3.5.2
- fairgenomeindexer up to 3.8.1
- Memory / time reservations
- Python
Published by tdayris over 1 year ago
fair_gatk_mutect2 - 1.5.0
Features:
- Split multi-allelic sites and left-normalize
- Automatically filter passing variants
- Support of tumor/normal-pairs calling
- Python
Published by tdayris over 1 year ago
fair_gatk_mutect2 - 1.4.1
Features:
- fairbowtie2mapping update to 3.3.3
- fairfastqcmultiqc update to 2.2.7
- Python
Published by tdayris almost 2 years ago
fair_gatk_mutect2 - 1.4.0
Features:
- Snakemake wrappers up to 3.7.0
- fairfastqcmultiqc up to version 3.3.2
- fairbowtie2mapping up to version 2.2.6
- fairgenomeindexer up to version 3.4.4
- Python
Published by tdayris almost 2 years ago
fair_gatk_mutect2 - 1.1.0
Features:
- temp, log, and benchmark paths rebuild
- rule names changed to follow between-workflows trace
- use of
lookupinstead of hand-made function - Relies on fairgenomeindexer version 3.1.4
- Relies on fairbowtie2mapping version 3.1.0
- Relies on fairfastqcmultiqc version 2.0.3
- MultiQC now holds only one
{species}.{build}.{release}
- Python
Published by tdayris almost 2 years ago
fair_gatk_mutect2 - 1.0.0
Features:
- Snakemake v8+ compatible
- Snakemake-wrappers
- Relies on fairgenomeindexer version 3.0.0
- Relies on fairbowtie2mapping version 3.0.1
- Deployable workflow with integration tests on Github
- Python
Published by tdayris about 2 years ago