napari-locan
Napari plugin to use locan methods in napari
Science Score: 52.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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✓Institutional organization owner
Organization super-resolution has institutional domain (www.super-resolution.biozentrum.uni-wuerzburg.de) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.5%) to scientific vocabulary
Keywords
Repository
Napari plugin to use locan methods in napari
Basic Info
- Host: GitHub
- Owner: super-resolution
- License: bsd-3-clause
- Language: Python
- Default Branch: main
- Homepage: https://napari-locan.readthedocs.io
- Size: 4.74 MB
Statistics
- Stars: 2
- Watchers: 0
- Forks: 0
- Open Issues: 0
- Releases: 7
Topics
Metadata Files
README.md
napari-locan
Load, visualize and analyze single-molecule localization microscopy (SMLM) data.
napari-locan is a napari plugin that implements a subset of methods from locan, a python-based library with code for analyzing SMLM data. Locan provides extended functionality that is better suited for script- or notebook-based analysis procedures. napari-locan is well suited for exploratory data analysis within napari.
For details on usage and development of napari-locan please read the documentation.
Installation
Make sure to have Qt bindings installed in your python environment of choice.
You can install napari-locan from PyPI:
pip install napari-locan
or from conda-forge:
conda install -c conda-forge napari-locan
Please read the documentation on installation for more details.
Usage
Please read the documentation for details.
Contributing
Contributions are very welcome. Please read the documentation on development for details.
Credit
The plugin was developed in the Department of Biotechnology and Biophysics, Würzburg University, Germany. It is based on locan. So credit goes to the locan developers and can be cited.
License
Distributed under the terms of the BSD-3 license, "napari-locan" is free and open source software. See the LICENSE file for details.
Issues
If you encounter any problems, please file an issue along with a detailed description.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Owner
- Name: Biotechnologie und Biophysik - Universität Würzburg
- Login: super-resolution
- Kind: organization
- Location: Würzburg
- Website: http://www.super-resolution.biozentrum.uni-wuerzburg.de
- Repositories: 15
- Profile: https://github.com/super-resolution
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Doose"
given-names: "Sören"
orcid: "https://orcid.org/0000-0002-6983-1182"
title: "Locan"
version: ">=0.18.0"
doi: "10.5281/zenodo.5722472"
date-released: 2023
url: "https://github.com/super-resolution/Locan"
preferred-citation:
type: article
authors:
- family-names: "Doose"
given-names: "Sören"
orcid: "https://orcid.org/0000-0002-6983-1182"
doi: "10.1093/bioinformatics/btac160"
journal: "Bioinformatics"
start: 2670 # First page number
end: 2672 # Last page number
title: "LOCAN: a python library for analyzing single-molecule localization microscopy data"
issue: 9
volume: 38
year: 2022
GitHub Events
Total
- Release event: 2
- Watch event: 2
- Delete event: 4
- Push event: 19
- Pull request event: 10
- Create event: 10
Last Year
- Release event: 2
- Watch event: 2
- Delete event: 4
- Push event: 19
- Pull request event: 10
- Create event: 10
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 25
- Average time to close issues: N/A
- Average time to close pull requests: 4 days
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 25
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: about 1 hour
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- sdoose (17)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 65 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 7
- Total maintainers: 1
pypi.org: napari-locan
Use locan methods in napari for single-molecule localization microscopy data.
- Documentation: https://napari-locan.readthedocs.io/
- License: BSD 3-Clause License Copyright (c) 2022-23, Biotechnologie und Biophysik - Universität Würzburg All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of napari-locan nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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Latest release: 0.7.0
published about 1 year ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- coactions/setup-xvfb v1 composite
- codecov/codecov-action v3 composite
- tlambert03/setup-qt-libs v1 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- coactions/setup-xvfb v1 composite
- tlambert03/setup-qt-libs v1 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- coactions/setup-xvfb v1 composite
- tlambert03/setup-qt-libs v1 composite
- 159 dependencies
- locan >=0.17
- matplotlib <3.8.0
- napari *
- napari-matplotlib *
- numpy *
- qtpy *
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- pypa/gh-action-pypi-publish release/v1 composite
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/setup-python v4 composite
- actions/upload-artifact v3 composite
- pypa/gh-action-pypi-publish release/v1 composite