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petab-gui

a graphical user-interface for pyPESTO and PEtab

https://github.com/pauljonasjost/petab_gui

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.2%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

a graphical user-interface for pyPESTO and PEtab

Basic Info
  • Host: GitHub
  • Owner: PaulJonasJost
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: develop
  • Size: 346 KB
Statistics
  • Stars: 2
  • Watchers: 3
  • Forks: 0
  • Open Issues: 3
  • Releases: 5
Created almost 2 years ago · Last pushed 7 months ago
Metadata Files
Readme License Zenodo

README.md

DOI

PEtabGUI

This is a graphical user interface to create parameter estimation problems. It is based on the PEtab format.

Installation

To install the PEtabGUI, you can follow these steps:

  1. Clone the repository: bash git clone https://github.com/PaulJonasJost/PEtab_GUI.git

  2. Pip install the PEtab GUI: bash pip install . (Run this command line within the repository folder)

Usage

To start the PEtab GUI, you can run the following command line: bash petab_gui $PATH_TO_YOUR_MODEL where $PATH_TO_YOUR_MODEL is an optional argument with a file path of your yaml-model file in case you want to work on an existing model. You can also leave this argument out to start from scratch.

Owner

  • Name: Paul Jonas Jost
  • Login: PaulJonasJost
  • Kind: user

GitHub Events

Total
  • Create event: 59
  • Release event: 3
  • Issues event: 33
  • Watch event: 1
  • Delete event: 67
  • Issue comment event: 60
  • Push event: 112
  • Pull request review comment event: 11
  • Pull request event: 111
  • Pull request review event: 47
Last Year
  • Create event: 59
  • Release event: 3
  • Issues event: 33
  • Watch event: 1
  • Delete event: 67
  • Issue comment event: 60
  • Push event: 112
  • Pull request review comment event: 11
  • Pull request event: 111
  • Pull request review event: 47

Committers

Last synced: 10 months ago

All Time
  • Total Commits: 95
  • Total Committers: 2
  • Avg Commits per committer: 47.5
  • Development Distribution Score (DDS): 0.232
Past Year
  • Commits: 95
  • Committers: 2
  • Avg Commits per committer: 47.5
  • Development Distribution Score (DDS): 0.232
Top Committers
Name Email Commits
Paul Jonas Jost 7****t 73
Frank T. Bergmann f****n@g****m 22

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 26
  • Total pull requests: 145
  • Average time to close issues: 3 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 0.38
  • Average comments per pull request: 0.66
  • Merged pull requests: 122
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 20
  • Pull requests: 139
  • Average time to close issues: 3 months
  • Average time to close pull requests: 8 days
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.45
  • Average comments per pull request: 0.56
  • Merged pull requests: 116
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • PaulJonasJost (19)
  • fbergmann (7)
Pull Request Authors
  • PaulJonasJost (119)
  • fbergmann (26)
Top Labels
Issue Labels
enhancement (11) fixed but not released (5) bug (1) question (1)
Pull Request Labels
enhancement (2)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 22 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 2
pypi.org: petab-gui

Graphical user interface for the PEtab format

  • Documentation: https://petab-gui.readthedocs.io/
  • License: Copyright (c) 2025, Paul Jonas Jost All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  • Latest release: 0.1.3
    published 11 months ago
  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 22 Last month
Rankings
Dependent packages count: 9.3%
Average: 30.9%
Dependent repos count: 52.5%
Maintainers (2)
frankbergmann.myopenid.com PaulJonasJost
Last synced: 7 months ago