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spike3d

A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

https://github.com/commanderpho/spike3d

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 6 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

Basic Info
  • Host: GitHub
  • Owner: CommanderPho
  • Language: Jupyter Notebook
  • Default Branch: master
  • Size: 823 MB
Statistics
  • Stars: 3
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created over 4 years ago · Last pushed 10 months ago
Metadata Files
Readme Citation

README.md

Spike3D DOI

A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

Email me at halechr@umich.edu for more info.

Please Cite as: @software{pho_hale_2022_6647483, author = {Pho Hale}, title = {CommanderPho/Spike3D: v0.0.3}, month = jun, year = 2022, publisher = {Zenodo}, version = {0.0.3}, doi = {10.5281/zenodo.6647483}, url = {https://doi.org/10.5281/zenodo.6647483} }

2024-09-27

``` PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D> poetry install --all-extras --no-root --sync Installing dependencies from lock file

Package operations: 0 installs, 1 update, 27 removals

  • Removing absl-py (2.1.0)
  • Removing astunparse (1.6.3)
  • Removing flatbuffers (24.3.25)
  • Removing google-pasta (0.2.0)
  • Removing grpcio (1.65.4)
  • Removing handsdown (2.1.0)
  • Removing iniconfig (2.0.0)
  • Removing keras (3.5.0)
  • Removing libclang (18.1.1)
  • Removing ml-dtypes (0.4.0)
  • Removing mpmath (1.3.0)
  • Removing namex (0.0.8)
  • Removing opencv-python (4.10.0.84)
  • Removing optree (0.12.1)
  • Removing pluggy (1.5.0)
  • Removing pyan (0.1.3)
  • Removing pynndescent (0.5.13)
  • Removing pyqt-responsive-label (0.0.3)
  • Removing pytest (7.4.4)
  • Removing snakeviz (2.2.0)
  • Removing sympy (1.13.2)
  • Removing tensorboard (2.17.0)
  • Removing tensorboard-data-server (0.7.2)
  • Removing termcolor (2.4.0)
  • Removing torch (2.4.0)
  • Removing torchvision (0.19.0)
  • Removing typed-ast (1.5.5)
  • Updating pyphoplacecellanalysis (0.2.2 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis -> 0.2.3 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis) PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D>

```

2025-05-12

```

uv add git+https://github.com/CommanderPho/phojupyterpreview_widget --tag v4.0.0

uv add ../phojupyterpreviewwidget/dist/phojupyterpreviewwidget-0.4.0-py3-none-any.whl

```

Owner

  • Name: Pho Hale
  • Login: CommanderPho
  • Kind: user

Check out my website at http://www.PhoHale.com

GitHub Events

Total
  • Push event: 882
  • Create event: 1
Last Year
  • Push event: 882
  • Create event: 1

Dependencies

EXTERNAL/Environment/PipRequirements_2023-02-07/new_pip_requirements.txt pypi
  • Automat ==20.2.0
  • Deprecated ==1.2.13
  • HeapDict ==1.0.1
  • PyQt5 ==5.15.4
  • PyQt5-Qt5 ==5.15.2
  • PyQt5-sip ==12.9.1
  • PyQt5Singleton ==0.1
  • PyQt6 ==6.1.0
  • PyQt6-Qt6 ==6.2.3
  • PyQt6-sip ==13.2.1
  • PyQtChart ==5.12
  • PyQtWebEngine ==5.12.1
  • QScintilla ==2.11.2
  • Twisted ==22.2.0
  • alabaster ==0.7.12
  • aplus ==0.11.0
  • asciitree ==0.3.3
  • autobahn ==22.3.2
  • binaryornot ==0.4.4
  • blinker ==1.4
  • certifi ==2022.6.15
  • commonmark ==0.9.1
  • conda ==4.13.0
  • conda-build ==3.21.9
  • constantly ==15.1.0
  • cytoolz ==0.11.2
  • dearpygui ==1.5.1
  • docopt ==0.6.2
  • easydict ==1.9
  • et-xmlfile ==1.1.0
  • fastrlock ==0.8
  • flatdict ==4.0.1
  • glob2 ==0.7
  • hickle ==3.4.5
  • hmmlearn ==0.2.7
  • hyperlink ==21.0.0
  • incremental ==21.3.0
  • indexed ==1.2.1
  • intervaltree ==3.0.2
  • ipython-genutils ==0.2.0
  • jupyter-rfb ==0.3.1
  • littleutils ==0.2.2
  • llvmlite ==0.38.0
  • locket ==0.2.1
  • mkl-service ==2.4.0
  • multipledispatch ==0.6.0
  • munkres ==1.1.4
  • opensimplex ==0.4.2
  • pandas-flavor ==0.2.0
  • ply ==3.11
  • polyscope ==1.3.1
  • poyo ==0.5.0
  • prodict ==0.8.18
  • protobuf ==3.19.4
  • pyarrow ==3.0.0
  • pyasn1 ==0.4.8
  • pyasn1-modules ==0.2.7
  • pyct ==0.4.6
  • pyqt5-plugins ==5.15.4.2.2
  • pyqt5-tools ==5.15.4.3.2
  • pyqt6-plugins ==6.1.0.2.2
  • pyqt6-tools ==6.1.0.3.2
  • pytest ==6.2.5
  • python-dotenv ==0.19.2
  • python-qt-live-coding ==0.4.2
  • pywin32 ==303
  • pyzstd ==0.15.1
  • qt5-applications ==5.15.2.2.2
  • qt5-tools ==5.15.2.1.2
  • qt6-applications ==6.1.0.2.2
  • qt6-tools ==6.1.0.1.2
  • scikit-posthocs ==0.6.7
  • sphinxcontrib-applehelp ==1.0.2
  • sphinxcontrib-devhelp ==1.0.2
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.3
  • tables ==3.7.0
  • text-unidecode ==1.3
  • torch ==1.10.2
  • twisted-iocpsupport ==1.0.2
  • txaio ==22.2.1
  • vaex-distributed ==0.3.0
  • vtk ===
  • webencodings ==0.5.1
  • wincertstore ==0.2
  • wslink ==1.4.3
  • xlwt ==1.3.0
  • zope.interface ==5.4.0
EXTERNAL/Environment/PipRequirements_2023-02-07/new_pip_requirements_web.txt pypi
  • Automat ==20.2.0
  • Deprecated ==1.2.13
  • HeapDict ==1.0.1
  • PyQt5 ==5.15.4
  • PyQt5-Qt5 ==5.15.2
  • PyQt5-sip ==12.9.1
  • PyQt5Singleton ==0.1
  • PyQt6 ==6.1.0
  • PyQt6-Qt6 ==6.2.3
  • PyQt6-sip ==13.2.1
  • PyQtChart ==5.12
  • PyQtWebEngine ==5.12.1
  • QScintilla ==2.11.2
  • Twisted ==22.2.0
  • alabaster ==0.7.12
  • aplus ==0.11.0
  • asciitree ==0.3.3
  • autobahn ==22.3.2
  • binaryornot ==0.4.4
  • blinker ==1.4
  • certifi ==2022.6.15
  • commonmark ==0.9.1
  • conda ==4.13.0
  • conda-build ==3.21.9
  • constantly ==15.1.0
  • cytoolz ==0.11.2
  • dearpygui ==1.5.1
  • docopt ==0.6.2
  • easydict ==1.9
  • et-xmlfile ==1.1.0
  • fastrlock ==0.8
  • flatdict ==4.0.1
  • glob2 ==0.7
  • hickle ==3.4.5
  • hmmlearn ==0.2.7
  • hyperlink ==21.0.0
  • incremental ==21.3.0
  • indexed ==1.2.1
  • intervaltree ==3.0.2
  • ipython-genutils ==0.2.0
  • jupyter-rfb ==0.3.1
  • littleutils ==0.2.2
  • llvmlite ==0.38.0
  • locket ==0.2.1
  • mkl-service ==2.4.0
  • multipledispatch ==0.6.0
  • munkres ==1.1.4
  • opensimplex ==0.4.2
  • pandas-flavor ==0.2.0
  • ply ==3.11
  • polyscope ==1.3.1
  • poyo ==0.5.0
  • prodict ==0.8.18
  • protobuf ==3.19.4
  • pyarrow ==3.0.0
  • pyasn1 ==0.4.8
  • pyasn1-modules ==0.2.7
  • pyct ==0.4.6
  • pyqt5-plugins ==5.15.4.2.2
  • pyqt5-tools ==5.15.4.3.2
  • pyqt6-plugins ==6.1.0.2.2
  • pyqt6-tools ==6.1.0.3.2
  • pytest ==6.2.5
  • python-dotenv ==0.19.2
  • python-qt-live-coding ==0.4.2
  • pywin32 ==303
  • pyzstd ==0.15.1
  • qt5-applications ==5.15.2.2.2
  • qt5-tools ==5.15.2.1.2
  • scikit-posthocs ==0.6.7
  • sphinxcontrib-applehelp ==1.0.2
  • sphinxcontrib-devhelp ==1.0.2
  • sphinxcontrib-jsmath ==1.0.1
  • sphinxcontrib-qthelp ==1.0.3
  • tables ==3.7.0
  • text-unidecode ==1.3
  • torch ==1.10.2
  • twisted-iocpsupport ==1.0.2
  • txaio ==22.2.1
  • vaex-distributed ==0.3.0
  • webencodings ==0.5.1
  • wincertstore ==0.2
  • wslink ==1.4.3
  • xlwt ==1.3.0
  • zope.interface ==5.4.0
EXTERNAL/Environment/PipRequirements_2023-02-07/requirements_pipdeptree.txt pypi