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Recent Releases of bluepymm

bluepymm - 0.9.11

What's Changed

  • migrate from setup.py to pyproject.toml by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/270

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.10...0.9.11

- Python
Published by github-actions[bot] over 1 year ago

bluepymm - 0.9.10

What's Changed

  • upper case ASC, SWC compatible hoc template by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/269

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.9...0.9.10

- Python
Published by github-actions[bot] almost 2 years ago

bluepymm - 0.9.9

What's Changed

  • update jinja templates by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/268

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.8...0.9.9

- Python
Published by github-actions[bot] almost 2 years ago

bluepymm - 0.9.8

What's Changed

  • remove tests from modules found by setuptools by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/267

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.7...0.9.8

- Python
Published by github-actions[bot] about 2 years ago

bluepymm - 0.9.7

What's Changed

  • new new template to setup package data by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/266

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.6...0.9.7

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.6

What's Changed

  • h5 morphology loadable hoc template/export by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/265

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.5...0.9.6

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.5

What's Changed

  • Update .readthedocs.yaml by @wvangeit in https://github.com/BlueBrain/BluePyMM/pull/264

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.4...0.9.5

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.4

What's Changed

  • add zenodo badge and bibtex citation by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/263

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.3...0.9.4

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.3

What's Changed

  • Fix zenodo license by @wvangeit in https://github.com/BlueBrain/BluePyMM/pull/262

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.2...0.9.3

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.2

What's Changed

  • add gh workflow to sync to ebrains mirror at each push by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/261

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.1...0.9.2

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.1

What's Changed

  • update the patch instead of the minor of the version when tagging by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/260

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.9.0...0.9.1

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.9.0

What's Changed

  • allow prepare-step to be rerun without deleting /tmp explicitly by @anilbey in https://github.com/BlueBrain/BluePyMM/pull/253
  • Fix 'keep alive' workflow & tox4 fix by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/254
  • Add py3.11 tests to github workflow by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/255
  • Stop using python3.7 in the tests by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/256
  • Pandas2.0 support by @anilbey in https://github.com/BlueBrain/BluePyMM/pull/258
  • add zenodo json file, and tag and release at each push by @AurelienJaquier in https://github.com/BlueBrain/BluePyMM/pull/259

Full Changelog: https://github.com/BlueBrain/BluePyMM/compare/0.8...0.9.0

- Python
Published by github-actions[bot] over 2 years ago

bluepymm - 0.5

A new required conf field was added to the prepare step: 'repmorphpath'. This has to point to a morphology release with repaired morphologies, and this directory has to contain the repaired versions of all the exemplar morphologies. The old 'morp_path' still exists, and points to the morphology release directory used for circuit building. The latter doesn't need to include the repaired exemplar morphologies though.

- Python
Published by wvangeit over 8 years ago

bluepymm -

The conf file of the select doesn't accept the key 'mmrunpath' anymore, this is replaced with e.g.: "scores_db": "./output/scores.sqlite"

- Python
Published by wvangeit over 8 years ago

bluepymm -

We removed the bluepymm-megate command, and everything now goes through the 'bluepymm' command. It now acts a bit like the 'pip' command, with subcommands.

There are three stages: prepare, run and select

'bluepymm prepare ' builds the me-combo database from the input files 'bluepymm run ' takes the database and runs all the combos 'bluepymm select ' is the megating step

A sample of a config for the new 'run' phase is here: https://github.com/BlueBrain/BluePyMM/blob/master/bluepymm/tests/examples/simple1/simple1confrun.json

The bluepymm command will show an help message if you run it without argument.

- Python
Published by wvangeit almost 9 years ago