derip2 - v0.4.0

What's Changed

• Standardises internal function opts to use kebab-case like the cmd line args (not backwards compatible)
• Add Mkdocs gh-pages

• render tutorial notebook with mkdocs

• Add mkdocs by @Adamtaranto in https://github.com/Adamtaranto/deRIP2/pull/22

Full Changelog: https://github.com/Adamtaranto/deRIP2/compare/v0.3.0...v0.4.0

- Python
Published by Adamtaranto 11 months ago

derip2 - v0.3.0

• Add methods to filter records on CRI or GC thresholds
• Filter to n best records on CRI or GC
• Add coverage tracking with codecov
• Fix README image links
• Add tutorial notebook with real data demo
• DeRIP2 can now take alignment fasta file OR Bio.Align.MultipleSeqAlignment object

Full Changelog: https://github.com/Adamtaranto/deRIP2/compare/v0.2.0...v0.3.0

- Python
Published by Adamtaranto 11 months ago

derip2 - v0.2.0

This release overhauls the main app and is not backwards compatible.

• Introduced new cmd line options
• All outputs have standard names with a user specified prefix
• Main app now uses the DeRIP Class
• Fixed plotting issues for large alignments
• Use Click for arg handling
• Add PyOpenSci reqs (CoC, Citation file, Contributing guide)

- Python
Published by Adamtaranto 11 months ago

derip2 - v0.1.0

What's Changed

Added DeRIP Class for compatibility with TEtrimmer. Use pre-commit-hooks to enforce formatting Removed Gitpod links and configs Improve logging Add TUI option Add pytests

Full Changelog: https://github.com/Adamtaranto/deRIP2/compare/0.0.3...v0.1.0

- Python
Published by Adamtaranto 12 months ago