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fmripost-phase

An attempt at an fMRIPost workflow for handling phase data

https://github.com/nipreps/fmripost-phase

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (1.3%) to scientific vocabulary

Keywords

fmri fmri-preprocessing fmriprep
Last synced: 6 months ago · JSON representation

Repository

An attempt at an fMRIPost workflow for handling phase data

Basic Info
  • Host: GitHub
  • Owner: nipreps
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 189 KB
Statistics
  • Stars: 3
  • Watchers: 3
  • Forks: 1
  • Open Issues: 11
  • Releases: 0
Topics
fmri fmri-preprocessing fmriprep
Created over 1 year ago · Last pushed 8 months ago
Metadata Files
Readme Changelog Contributing License Zenodo

README.md

fMRIPost-Phase

Preprocessing of fMRI phase data using BIDS derivatives from magnitude preprocessing.

Expected outputs

sub-<label>/[ses-<label>/] func/ # Unwrapped phase data <source_entities>[_space-<label>]_desc-unwrapped_bold.nii.gz # First derivative of phase image <source_entities>[_space-<label>]_desc-jump_bold.nii.gz # Second derivative of phase image <source_entities>[_space-<label>]_desc-jolt_bold.nii.gz # Confounds extracted from the phase data <source_entities>_desc-confounds_timeseries.tsv <source_entities>_desc-confounds_timeseries.json

Owner

  • Name: NeuroImaging PREProcessing toolS
  • Login: nipreps
  • Kind: organization
  • Email: nipreps@gmail.com

GitHub Events

Total
  • Issues event: 5
  • Watch event: 1
  • Delete event: 13
  • Issue comment event: 10
  • Push event: 78
  • Pull request review event: 1
  • Pull request event: 28
  • Create event: 18
Last Year
  • Issues event: 5
  • Watch event: 1
  • Delete event: 13
  • Issue comment event: 10
  • Push event: 78
  • Pull request review event: 1
  • Pull request event: 28
  • Create event: 18

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 7
  • Total pull requests: 14
  • Average time to close issues: 7 months
  • Average time to close pull requests: 4 days
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.21
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 11
Past Year
  • Issues: 2
  • Pull requests: 14
  • Average time to close issues: 7 months
  • Average time to close pull requests: 4 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 3.5
  • Average comments per pull request: 0.21
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 11
View more stats
Top Authors
Issue Authors
  • tsalo (9)
Pull Request Authors
  • dependabot[bot] (15)
  • tsalo (3)
  • effigies (1)
Top Labels
Issue Labels
enhancement (5)
Pull Request Labels
dependencies (15) github_actions (15)

Dependencies

.github/workflows/contrib.yml actions
  • actions/checkout v4 composite
  • codespell-project/actions-codespell v2 composite
.github/workflows/docker.yml actions
  • actions/checkout v4 composite
  • docker/build-push-action v6.9.0 composite
  • docker/login-action v3.3.0 composite
  • docker/metadata-action v5.5.1 composite
  • docker/setup-buildx-action v3.6.1 composite
.github/workflows/test.yml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • codecov/codecov-action v4 composite
Dockerfile docker
  • ${BASE_IMAGE} latest build
  • downloader latest build
  • python slim build
pyproject.toml pypi
  • fmriprep @ git+https://github.com/nipreps/fmriprep.git@master
  • nipype >= 1.8.5
  • nireports @ git+https://github.com/nipreps/nireports.git@main
  • niworkflows @ git+https://github.com/nipreps/niworkflows.git@master
  • pybids >= 0.15.6
  • sdcflows @ git+https://github.com/nipreps/sdcflows.git@master
  • smriprep @ git+https://github.com/nipreps/smriprep.git@master
  • typer *