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Open Source Science

ngs-longreads-training

https://github.com/sib-swiss/ngs-longreads-training

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
Statistics
  • Stars: 12
  • Watchers: 5
  • Forks: 2
  • Open Issues: 9
  • Releases: 11
Created over 5 years ago · Last pushed over 1 year ago
Metadata Files
Readme Zenodo

README.md

jupyter build and push CI rstudio build and push CI GitHub Release Date DOI License: CC BY-SA 4.0

This website is hosted at: https://sib-swiss.github.io/NGS-longreads-training/latest/

Please refer to issues for improvements/bugs for course material or the website.

Any contribution to this course material is highly appreciated :+1:. Please have a look at the CONTRIBUTING.md file to learn more on how to contribute.

Course website template

This website is generated with MkDocs, with the theme Material.

To host it locally, install MkDocs: bash pip install mkdocs

and Material: bash pip install mkdocs-material

Host it with: bash mkdocs serve

Check it out with your browser at http://localhost:8000/

Owner

  • Name: SIB Swiss Institute of Bioinformatics
  • Login: sib-swiss
  • Kind: organization
  • Location: Switzerland

GitHub Events

Total
  • Release event: 5
  • Watch event: 4
  • Push event: 8
  • Create event: 4
Last Year
  • Release event: 5
  • Watch event: 4
  • Push event: 8
  • Create event: 4

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 116
  • Total Committers: 2
  • Avg Commits per committer: 58.0
  • Development Distribution Score (DDS): 0.362
Past Year
  • Commits: 8
  • Committers: 2
  • Avg Commits per committer: 4.0
  • Development Distribution Score (DDS): 0.125
Top Committers
Name Email Commits
Geert van Geest g****t@b****h 74
Geert van Geest g****t@s****s 42
Committer Domains (Top 20 + Academic)
sib.swiss: 1 bioinformatics.unibe.ch: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 10
  • Total pull requests: 0
  • Average time to close issues: 1 minute
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • GeertvanGeest (9)
  • ghost (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/push_jupyter_container.yml actions
  • actions/checkout v2 composite
  • docker/build-push-action v2 composite
  • docker/login-action v1 composite
  • docker/metadata-action v3 composite
  • docker/setup-buildx-action v1 composite
  • docker/setup-qemu-action v1 composite
.github/workflows/push_rstudio_container.yml actions
  • actions/checkout v2 composite
  • docker/build-push-action v2 composite
  • docker/login-action v1 composite
  • docker/metadata-action v3 composite
  • docker/setup-buildx-action v1 composite
  • docker/setup-qemu-action v1 composite
Docker/jupyter/Dockerfile docker
  • jupyter/minimal-notebook e407f93c8dcc build
Docker/rstudio/Dockerfile docker
  • rocker/rstudio 4.2.0 build