Science Score: 64.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: biorxiv.org -
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.0%) to scientific vocabulary
Repository
A Biological Oscillations Analysis Toolkit
Basic Info
Statistics
- Stars: 20
- Watchers: 2
- Forks: 11
- Open Issues: 6
- Releases: 6
Metadata Files
README.md
pyBOAT - A Biological Oscillations Analysis Toolkit
Tools for time-frequency analysis of noisy time series. More details can be found in the accompanying manuscript Optimal time frequency analysis for biological data - pyBOAT. For help, questions or comments please join the official chat on gitter, write an issue or start a discussion.
pyBOAT features a multi-layered graphical user interface. Here an example screenshot showing the DataViewer(left), where preprocessing of individual signals gets visualized, and the resulting Wavelet Spectrum with a ridge tracing the detected main oscillatory component with a $\sim$ 24h period (right):
Features
- x-platform GUI
- High-pass sinc filter
- Fourier analysis
- Wavelet analysis
- Ridge detection, phase and amplitude extraction
- Synthetic signal generator
- Batch processing
- Ensemble statistics
See also the sister project SpyBoat for spatially resolved time-frequency analysis with wavelets.
Documentation
For the public API see the single signal demonstration and the ensemble statistics example. Consult the respective Python docstrings for further details.
Quick install via command line
With pip:
pip install pyboat
or with conda:
conda install -c conda-forge pyboat
Then start the UI from the terminal:
pyboat
or use import pyboat in your Python scripts.
Owner
- Name: tensionhead
- Login: tensionhead
- Kind: user
- Location: Heidelberg, Germany
- Company: @esi-neuroscience
- Website: orcid.org/0000-0002-3521-715X
- Twitter: tensionheadx
- Repositories: 3
- Profile: https://github.com/tensionhead
Theoretical/computational scientist | Python fan | Forest lover
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: pyBOAT
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Gregor
family-names: Mönke
email: tensionheadx@gmail.com
orcid: 'https://orcid.org/0000-0002-3521-715X'
identifiers:
- type: url
value: >-
https://www.biorxiv.org/content/10.1101/2020.04.29.067744v3
description: Link to the preprint publication
repository-code: 'https://github.com/tensionhead/pyBOAT'
url: 'https://github.com/tensionhead/pyBOAT'
abstract: >-
A tool for time-frequency analysis of noisy non-stationary
signals with Morlet Wavelets and FIR filters.
keywords:
- time series analysis
- spectral analysis
- UI
license: GPL-3.0-or-later
commit: ad5c7a9
version: 0.9.10
date-released: '2023-01-03'
GitHub Events
Total
- Issues event: 8
- Watch event: 2
- Delete event: 1
- Issue comment event: 6
- Push event: 13
- Pull request event: 2
- Create event: 1
Last Year
- Issues event: 8
- Watch event: 2
- Delete event: 1
- Issue comment event: 6
- Push event: 13
- Pull request event: 2
- Create event: 1
Committers
Last synced: almost 3 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| gregor | g****e@e****e | 234 |
| tensionhead | t****x@g****m | 88 |
| The Gitter Badger | b****r@g****m | 1 |
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 20
- Total pull requests: 11
- Average time to close issues: 5 months
- Average time to close pull requests: 39 minutes
- Total issue authors: 6
- Total pull request authors: 2
- Average comments per issue: 1.75
- Average comments per pull request: 0.0
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 4
- Average time to close issues: 13 days
- Average time to close pull requests: less than a minute
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 0.33
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tensionhead (15)
- orijitghosh (1)
- nehabinish (1)
- LingyunXiong (1)
- LiBuchauer (1)
- feyzanar (1)
Pull Request Authors
- tensionhead (9)
- gitter-badger (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- pypi 105 last-month
-
Total dependent packages: 2
(may contain duplicates) -
Total dependent repositories: 1
(may contain duplicates) - Total versions: 52
- Total maintainers: 1
pypi.org: pyboat
pyBOAT - A Biological Oscillations Analysis Toolkit
- Homepage: https://github.com/tensionhead/pyBOAT
- Documentation: https://pyboat.readthedocs.io/
- License: GNU General Public License v3 or later (GPLv3+)
-
Latest release: 0.9.12
published almost 3 years ago
Rankings
Maintainers (1)
conda-forge.org: pyboat
Interactive time-frequency analysis for biological data using wavelets. Features optimal sinc filter for detrending and provides phase, period and amplitude extraction of non-stationary oscillatory signals.
- Homepage: https://github.com/tensionhead/pyboat
- License: GPL-3.0-or-later
-
Latest release: 0.9.9
published over 3 years ago