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Recent Releases of ibaqpy

ibaqpy - v0.0.4

What's Changed

  • Update data processing by @enriquea in https://github.com/bigbio/ibaqpy/pull/90
  • Added cli option for batch correction by @enriquea in https://github.com/bigbio/ibaqpy/pull/91
  • minor update with figure description by @ypriverol in https://github.com/bigbio/ibaqpy/pull/92
  • Dev by @ypriverol in https://github.com/bigbio/ibaqpy/pull/93
  • Added support for anndata by @enriquea in https://github.com/bigbio/ibaqpy/pull/94
  • minor refinements by @ypriverol in https://github.com/bigbio/ibaqpy/pull/95
  • added logging output and description by @enriquea in https://github.com/bigbio/ibaqpy/pull/96
  • Dev by @ypriverol in https://github.com/bigbio/ibaqpy/pull/97
  • 0.0.3 -> 0.0.4 version updated by @ypriverol in https://github.com/bigbio/ibaqpy/pull/98
  • Polish CLI by @mobiusklein in https://github.com/bigbio/ibaqpy/pull/99
  • Clean code, remove print -> logger, add all authors. by @ypriverol in https://github.com/bigbio/ibaqpy/pull/100
  • Dev by @ypriverol in https://github.com/bigbio/ibaqpy/pull/101

Full Changelog: https://github.com/bigbio/ibaqpy/compare/v0.0.3...v0.0.4

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Published by ypriverol about 1 year ago

ibaqpy - v0.0.3

What's Changed

  • version 0.0.2 increased. by @ypriverol in https://github.com/bigbio/ibaqpy/pull/20
  • Polars by @ypriverol in https://github.com/bigbio/ibaqpy/pull/21
  • version 0.0.2 increased. by @ypriverol in https://github.com/bigbio/ibaqpy/pull/22
  • Polars by @ypriverol in https://github.com/bigbio/ibaqpy/pull/23
  • add QC profile for each step by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/24
  • Added required test scripts to perform the following tasks: by @enriquea in https://github.com/bigbio/ibaqpy/pull/19
  • Normalized peptide intensities generated from MSstats using streaming processing by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/25
  • Bugs fixed by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/26
  • filter proteins didn't found in fasta by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/27
  • make removelowfrequency_peptides as a flag by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/28
  • ibaqpy update by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/29
  • Enable parquet streaming by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/30
  • pre-update of ibaqpy by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/31
  • Get protein accessions from multiple databases by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/32
  • adapt to new pandas by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/33
  • Temp PR for stream normalization by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/36
  • Fix bugs and add quantile normalization considers NA values by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/37
  • Major update of ibaqpy by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/45
  • add mergeFractions by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/47
  • update: doc by @zprobot in https://github.com/bigbio/ibaqpy/pull/48
  • benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/50
  • update: ibaq by @zprobot in https://github.com/bigbio/ibaqpy/pull/51
  • optimize by @zprobot in https://github.com/bigbio/ibaqpy/pull/52
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/53
  • First iteration benchmark by @ypriverol in https://github.com/bigbio/ibaqpy/pull/54
  • Patch by @ypriverol in https://github.com/bigbio/ibaqpy/pull/56
  • small changes in benchmark by @ypriverol in https://github.com/bigbio/ibaqpy/pull/55
  • python black added by @ypriverol in https://github.com/bigbio/ibaqpy/pull/57
  • update: todo by @zprobot in https://github.com/bigbio/ibaqpy/pull/58
  • update by @zprobot in https://github.com/bigbio/ibaqpy/pull/60
  • Refactoring of the commandline by @ypriverol in https://github.com/bigbio/ibaqpy/pull/59
  • update: readme by @zprobot in https://github.com/bigbio/ibaqpy/pull/61
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/62
  • Minor changes in the README by @ypriverol in https://github.com/bigbio/ibaqpy/pull/63
  • Dev by @ypriverol in https://github.com/bigbio/ibaqpy/pull/64
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/65
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/66
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/67
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/68
  • update: benchmark by @zprobot in https://github.com/bigbio/ibaqpy/pull/69
  • ENTRAPMENT -> ENTRAP by @ypriverol in https://github.com/bigbio/ibaqpy/pull/70
  • update: ibaqpy by @zprobot in https://github.com/bigbio/ibaqpy/pull/73
  • update: test by @zprobot in https://github.com/bigbio/ibaqpy/pull/75
  • changes in dependencies by @ypriverol in https://github.com/bigbio/ibaqpy/pull/74
  • tpa by @zprobot in https://github.com/bigbio/ibaqpy/pull/77
  • major changes for package remove setup.py by @ypriverol in https://github.com/bigbio/ibaqpy/pull/78
  • little change by @zprobot in https://github.com/bigbio/ibaqpy/pull/80
  • update: variable by @zprobot in https://github.com/bigbio/ibaqpy/pull/81
  • Major refactoring of the structure of the project. by @ypriverol in https://github.com/bigbio/ibaqpy/pull/79
  • Add qodana CI checks by @qodana-cloud in https://github.com/bigbio/ibaqpy/pull/83
  • documenting code and functions. by @ypriverol in https://github.com/bigbio/ibaqpy/pull/82
  • update：doc by @zprobot in https://github.com/bigbio/ibaqpy/pull/86
  • update: doc by @zprobot in https://github.com/bigbio/ibaqpy/pull/87
  • Refactoring of static data and dispatch behavior, I/O streamlining by @mobiusklein in https://github.com/bigbio/ibaqpy/pull/88
  • Dev by @ypriverol in https://github.com/bigbio/ibaqpy/pull/89

New Contributors

  • @enriquea made their first contribution in https://github.com/bigbio/ibaqpy/pull/19
  • @zprobot made their first contribution in https://github.com/bigbio/ibaqpy/pull/48
  • @qodana-cloud made their first contribution in https://github.com/bigbio/ibaqpy/pull/83
  • @mobiusklein made their first contribution in https://github.com/bigbio/ibaqpy/pull/88

Full Changelog: https://github.com/bigbio/ibaqpy/compare/0.0.2...v0.0.3

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Published by ypriverol about 1 year ago

ibaqpy - Release v0.0.2

What's Changed

  • Filter msstats by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/16
    • Filter peptides with length < 7
    • Filter proteins with less than 2 unique peptides.

Full Changelog: https://github.com/bigbio/ibaqpy/compare/0.0.1...0.0.2

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Published by ypriverol almost 3 years ago

ibaqpy - Release v0.0.1

First pre-release:

What's Changed

  • Small changes by @ypriverol in https://github.com/bigbio/ibaqpy/pull/1
  • Peptide intensity tables script by @ypriverol in https://github.com/bigbio/ibaqpy/pull/2
  • minor changes to include compress in the normalization tool by @ypriverol in https://github.com/bigbio/ibaqpy/pull/3
  • Update by @ypriverol in https://github.com/bigbio/ibaqpy/pull/5
  • q-values when Posterior Error probability by @ypriverol in https://github.com/bigbio/ibaqpy/pull/6
  • fixed some bugs and adapted to TMT by @daichengxin in https://github.com/bigbio/ibaqpy/pull/7
  • Update peptidefilegeneration.py by @daichengxin in https://github.com/bigbio/ibaqpy/pull/8
  • Compute TPA and protein concentration by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/10
  • Preliminary update by @WangHong007 in https://github.com/bigbio/ibaqpy/pull/11

New Contributors

  • @ypriverol made their first contribution in https://github.com/bigbio/ibaqpy/pull/1
  • @daichengxin made their first contribution in https://github.com/bigbio/ibaqpy/pull/7
  • @WangHong007 made their first contribution in https://github.com/bigbio/ibaqpy/pull/10

Full Changelog: https://github.com/bigbio/ibaqpy/commits/0.0.1

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Published by ypriverol almost 3 years ago