stir

Software for Tomographic Image Reconstruction

https://github.com/ucl/stir

Science Score: 85.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
20 of 62 committers (32.3%) from academic institutions
✓
Institutional organization owner
Organization ucl has institutional domain (www.ucl.ac.uk)
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (8.9%) to scientific vocabulary

Keywords

image-reconstruction pet spect

Last synced: 6 months ago · JSON representation ·

Repository

Software for Tomographic Image Reconstruction

Basic Info

Host: GitHub
Owner: UCL
License: other
Language: C++
Default Branch: master
Homepage: http://stir.sourceforge.net/
Size: 87.1 MB

Statistics

Stars: 128
Watchers: 15
Forks: 99
Open Issues: 342
Releases: 11

Topics

image-reconstruction pet spect

Created over 10 years ago · Last pushed 6 months ago

Metadata Files

Readme Contributing License Citation

STIR: Software for Tomographic Image Reconstruction.

STIR is Open Source software for use in tomographic imaging. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations in tomographic imaging. Currently, the emphasis is on (iterative) image reconstruction in PET and SPECT, but other application areas and imaging modalities can and might be added.

STIR is the successor of the PARAPET software library which was the result of a (European Union funded) collaboration between 6 different partners. It has since received contributions from numerous institutions and individuals. Check the CREDITS.

Please check the STIR web-site at http://STIR.sourceforge.net for more information.

This software is distributed under an open source license, see LICENSE.txt for details.

Owner

Name: University College London
Login: UCL
Kind: organization
Email: rc-softdev@ucl.ac.uk

Website: www.ucl.ac.uk
Repositories: 300
Profile: https://github.com/UCL

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: STIR Software for Tomographic Image Reconstruction
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
    - family-names: Efthimiou
      given-names:  Nikos
      orcid:        'https://orcid.org/0000-0003-1947-5033'
    - family-names: Mustafovic
      given-names:  Sanida
      affiliation:  Imperial College London (UK)
    - family-names: Brown
      given-names:  Richard
      orcid:        'https://orcid.org/0000-0001-6989-9200'
      affiliation:  University College London
    - family-names: Twyman Skelly
      given-names:  Robert
      affiliation:  University College London and Prescient Imaging
    - family-names: Deidda
      given-names:  Daniel
      orcid:        'https://orcid.org/0000-0002-2766-4339'
      affiliation:  National Physics Laboratory (UK)
    - family-names: Tsoumpas
      given-names:  Charalampos
    - family-names: Falcon
      given-names:  Carles
    - family-names: Jehl
      given-names:  Markus
      affiliation:  Positrigo
    - family-names: Borgeaud
      given-names:  Tim
      affiliation:  Hammersmith Imanet Ltd
    - family-names: Strugari
      given-names:  Matthew
      affiliation:  Dalhousie University (Canada)
    - family-names: Khateri
      given-names:  Parisa
      affiliation:  ETH Zuerich
    - family-names: Wadhwa
      given-names:  Palak
      affiliation:  University of Leeds (UK)
    - family-names: Beisel
      given-names:  Tobias
    - family-names: Emond
      given-names:  Elise
      affiliation:  University College London
    - family-names: Gillman
      given-names:  Ashley
      orcid:        'https://orcid.org/0000-0001-9130-1092'
      affiliation:  >-
        Commonwealth Scientific and Industrial Research
        Organisation, and University of Queensland
    - family-names: Jacobson
      given-names:  Matthew
    - family-names: Zverovich
      given-names:  Alexey
      affiliation:  Brunel University (UK)
    - family-names: Fuster Marti
      given-names:  Berta
      affiliation:  University of Barcelona (Spain)
    - family-names: Labbe
      given-names:  Claire
    - family-names: Biguri
      given-names:  Ander
      orcid:        'https://orcid.org/0000-0002-2636-3032'
      affiliation:  University College London
    - family-names: Fischer
      given-names:  Jannis
      orcid:        'https://orcid.org/0000-0002-8329-0220'
    - family-names: Roethlisberger
      given-names:  Michael
      affiliation:  ETH Zuerich
    - family-names: Bertolli
      given-names:  Ottavia
      affiliation:  University College London
    - family-names: Brusaferri
      given-names:  Ludovica
      affiliation:  University College London
    - family-names: Thomas
      given-names:  Benjamin
      orcid:        'https://orcid.org/0000-0002-9784-1177'
      affiliation:  University College London
    - family-names: Pasca
      given-names:  Edoardo
      affiliation:  UK Research & Innovation
      orcid:        'https://orcid.org/0000-0001-6957-2160'
    - family-names: Aguiar
      given-names:  Pablo
    - family-names: Niknejad
      given-names:  Tahereh
    - family-names: Sadki
      given-names:  Mustapha
      affiliation:  Brunel University (UK)
    - family-names: Kerrouche
      given-names:  Nacer
      affiliation:  Hammersmith Imanet Ltd
    - family-names: Dikaios
      given-names:  Nikos
    - family-names: Fardell
      given-names:  Gemma
      orcid:        'https://orcid.org/0000-0003-2388-5211'
      affiliation:  UK Research & Innovation
    - family-names: Ehrhardt
      given-names:  Matthias J.
      orcid:        'https://orcid.org/0000-0001-8523-353X'
    - family-names: Singh
      given-names:  Imraj
      orcid:        'https://orcid.org/0000-0003-2186-0977'
      affiliation:  University College London (UK)
    - family-names: Schmidtlein
      given-names:  C Ross
    - family-names: Ovtchinnikov
      given-names:  Evgueni
      orcid:        'https://orcid.org/0000-0002-9359-6514'
      affiliation:  UK Research & Innovation
    - family-names: Valente
      given-names:  Patrick
      affiliation:  Brunel University (UK)
    - family-names: Jurjew
      given-names:  Nicole
      affiliation:  University College London
    - family-names: Schramm
      given-names:  Georg
      affiliation:  Katholieke Universiteit Leuven (Belgium)
    - family-names: Völgyes
      given-names:  David
    - family-names: Dinelle
      given-names:  Katie
    - family-names: Belluzzo
      given-names:  Damiano
      affiliation:  Hospedale San Raffaele Milano (Italy)
    - family-names: Ching
      given-names:  Daniel
    - family-names: Hague
      given-names:  Darren
      affiliation:  Brunel University (UK)
    - family-names: Tunnicliffe
      given-names:  Harry
      affiliation:  University of Leeds (UK)
    - family-names: Chen
      given-names:  Gefei
    - family-names: Porter
      given-names:  Sam David
      affiliation:  University College London, National Physics Laboratory (UK)
    - family-names: Mikhaylova
      given-names:  Ekaterina
      affiliation:  Positrigo
    - family-names: Dao
      given-names:  Viet Anh
      affiliation:  University of Leeds (UK)
    - family-names: da Costa-Luis
      given-names:  Casper O.
      orcid:        'https://orcid.org/0000-0002-7211-1557'
    - family-names: Whitehead
      given-names:  Alexander C.
      affiliation:  University College London
    - family-names: Rashidnasab
      given-names:  Alaleh
      affiliation:  University College London
    - family-names: Gillen
      given-names:  Rebecca
      affiliation:  University College London
    - family-names: Vavrek
      given-names:  Jayson
    - family-names: Tsai
      given-names:  Yu-jung
      affiliation:  University College London
    - family-names: Kohr
      given-names:  Holger
    - name: tokkot
    - family-names: El Katib
      given-names:  Mahmoud
    - family-names: Thielemans
      given-names:  Kris
      orcid:        'https://orcid.org/0000-0002-5514-199X'
      affiliation:   University College London
identifiers:
    - type: doi
      value: 10.1088/0031-9155/57/4/867
    - type: doi
      value: 10.3389/fnume.2023.1134774
    - type: doi
      value: 10.1186/s40658-019-0248-9
    - type: doi
      value: 10.3390/jimaging8060172
    - type: doi
      value: 10.1088/1361-6560/aaf9b9
    - type: doi
      value: 10.1109/NSSMIC.2018.8824341
    - type: doi
      value: 10.1186/2197-7364-1-s1-a44
    - type: doi
      value: 10.1109/nssmic.2013.6829258
    - type: doi
      value: 10.1118/1.4816676
    - type: doi
      value: 10.1007/s12149-011-0514-y
    - type: doi
      value: 10.1016/j.compmedimag.2011.01.002
    - type: doi
      value: 10.1088/1742-6596/317/1/012002
    - type: doi
      value: 10.1109/nssmic.2008.4774198
    - type: doi
      value: 10.1109/nssmic.2006.354345
    - type: doi
      value: 10.1109/nssmic.2005.1596753
    - type: doi
      value: 10.1109/nssmic.2004.1466455
    - type: doi
      value: 10.1109/nssmic.2004.1466782
    - type: doi
      value: 10.1109/nssmic.2002.1239610
    - type: doi
      value: 10.1109/NSSMIC.2001.1008688
    - type: doi
      value: 10.1088/0031-9155/45/8/325
    - type: doi
      value: 10.1007/978-3-642-60125-5_50
    - type: doi
      value: 10.1088/1361-6420/ab013f
    - type: doi
      value: 10.1109/TRPMS.2018.2884176
    - type: doi
      value: 10.1109/nssmic.2018.8824312
    - type: doi
      value: 10.1109/NSS/MIC42101.2019.9059665
repository-code: 'https://github.com/UCL/STIR'
keywords:
  - pet
  - spect
  - medical imaging
  - image reconstruction
  - open-source software
license: Apache-2.0

GitHub Events

Total

Fork event: 5
Create event: 5
Commit comment event: 1
Issues event: 60
Watch event: 20
Delete event: 3
Member event: 3
Issue comment event: 214
Push event: 53
Gollum event: 20
Pull request review comment event: 128
Pull request review event: 116
Pull request event: 80

Last Year

Fork event: 5
Create event: 5
Commit comment event: 1
Issues event: 60
Watch event: 20
Delete event: 3
Member event: 3
Issue comment event: 214
Push event: 53
Gollum event: 20
Pull request review comment event: 128
Pull request review event: 116
Pull request event: 80

Committers

Last synced: 9 months ago

All Time

Total Commits: 8,496
Total Committers: 62
Avg Commits per committer: 137.032
Development Distribution Score (DDS): 0.31

Past Year

Commits: 219
Committers: 11
Avg Commits per committer: 19.909
Development Distribution Score (DDS): 0.269

Top Committers

Name	Email	Commits
Kris Thielemans	k**s@u**k	5,861
Charalampos Tsoumpas	C**s@s**r	371
Sanida Mustafovic	S**c@s**r	343
Robert Twyman Skelly	r**k@g**m	336
Nikos Efthimiou	n**u@g**m	320
Daniel Deidda	d**a@n**k	298
Richard Brown	r**n@u**k	106
Markus Jehl	m**l@p**m	90
Matthew Jacobson	M**n@s**r	73
Palak Wadhwa	p**1@g**m	63
Ander Biguri	a**i@g**m	59
Ashley Gillman	g**h@g**m	51
Nikos Dikaios	N**s@s**r	50
Claire Labbe	C**e@s**r	43
Elise Emond	e**d@g**m	40
Ludovica Brusaferri	l**6@u**k	28
Pablo Aguiar	P**r@s**r	28
Nicole Jurjew	n**0@u**k	27
Evgueni Ovtchinnikov	e**v@s**k	26
Tim Borgeaud	T**d@s**r	23
Benjamin Thomas	b**4@g**m	20
Parisa Khateri	p**i@p**h	19
Ottavia Bertolli	o**3@u**k	19
Matthew Strugari	m**i@d**a	18
David Völgyes	d**s@i**g	17
Gemma Fardell	g**l@s**k	15
Jannis Fischer	j**r@p**m	14
Darren Hague	D**e@s**r	13
Imraj Singh	i**0@u**k	11
Nacer Kerrouche	N**e@s**r	11
and 32 more...

Committer Domains (Top 20 + Academic)

ucl.ac.uk: 10 positrigo.com: 3 stfc.ac.uk: 2 leeds.ac.uk: 2 npl.co.uk: 1 phys.ethz.ch: 1 dal.ca: 1 ieee.org: 1 kuleuven.be: 1 ethz.ch: 1 tecnico.ulisboa.pt: 1 physics.org: 1 github.com: 1 no.email: 1 bath.ac.uk: 1 githob.com: 1 lbl.gov: 1 kth.se: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 234
Total pull requests: 299
Average time to close issues: 11 months
Average time to close pull requests: about 1 month
Total issue authors: 31
Total pull request authors: 19
Average comments per issue: 1.55
Average comments per pull request: 3.34
Merged pull requests: 217
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 48
Pull requests: 99
Average time to close issues: 20 days
Average time to close pull requests: 11 days
Issue authors: 14
Pull request authors: 15
Average comments per issue: 0.69
Average comments per pull request: 1.72
Merged pull requests: 60
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

KrisThielemans (142)
robbietuk (23)
markus-jehl (22)
danieldeidda (7)
Robert-PrescientImaging (5)
katerinachytra (3)
adler-j (2)
HyperionCore (2)
SomayehSaghamanesh (2)
rshopa (2)
christanmod (2)
samdporter (2)
mastergari (2)
imbeatriz (1)
NikEfth (1)

Pull Request Authors

KrisThielemans (172)
robbietuk (32)
markus-jehl (29)
danieldeidda (12)
NicoleJurjew (10)
NikEfth (7)
SomayehSaghamanesh (5)
Robert-PrescientImaging (5)
rmapree (4)
Dimitra-Kyriakopoulou (4)
evgueni-ovtchinnikov (4)
ashgillman (4)
samdporter (3)
mastergari (2)
Imraj-Singh (2)

Top Labels

Issue Labels

bug (39) enhancement (22) help wanted (7) wontfix (2) Upstream fix required (2) question (2)

Pull Request Labels

enhancement (54) bug (21) in-progress (9) help wanted (3) question (2)

Packages

Total packages: 1
Total downloads: unknown

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 8

conda-forge.org: stir

STIR is Open Source software for use in tomographic imaging. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations in tomographic imaging. Check the recipe at https://github.com/conda-forge/stir-feedstock/blob/main/recipe/meta.yaml to see which dependencies are included in this conda package. This package contains all STIR utilities and Python support. It is built with ITK on all platforms and (where supported) ROOT on Linux and OSX.

Homepage: http://stir.sourceforge.net/
License: Apache-2.0 AND LicenseRef-PARAPET-license
Latest release: 5.0.2
published over 3 years ago

Versions: 8
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Forks count: 18.5%

Stargazers count: 32.6%

Dependent repos count: 34.0%

Average: 34.1%

Dependent packages count: 51.2%

Last synced: 6 months ago

Dependencies

.github/workflows/build-test.yml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
hendrikmuhs/ccache-action v1 composite
mxschmitt/action-tmate v3 composite

.github/workflows/cffconvert.yml actions

actions/checkout v2 composite
citation-file-format/cffconvert-github-action 2.0.0 composite

.github/workflows/pre-commit-check.yml actions

actions/checkout v4 composite
actions/setup-python v5 composite
pre-commit/action v3.0.0 composite

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

stir

Science Score: 85.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

STIR: Software for Tomographic Image Reconstruction.

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

conda-forge.org: stir

Rankings

Dependencies