@article{ritchie2015limma,
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}

@article{chen2024edger,
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  publisher={Cold Spring Harbor Laboratory}
}

@Manual{datatable2025,
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}

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@article{shah2024transcriptomic,
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  year={2024},
  publisher={Elsevier}
}
@article{chen2020edger,
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}

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  year={2020},
  publisher={Faculty of 1000 Ltd.}
}

@article{raudvere2019g,
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}

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}

@MISC{Neuwirth2002-wz,
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               Contributed Packages"
}

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}

@article{garcesAntibodyMediatedRejectionReview2017,
  title = {Antibody-{{Mediated Rejection}}: {{A Review}}},
  shorttitle = {Antibody-{{Mediated Rejection}}},
  author = {Garces, Jorge Carlos and Giusti, Sixto and {Staffeld-Coit}, Catherine and Bohorquez, Humberto and Cohen, Ari J. and Loss, George E.},
  year = {2017},
  journal = {Ochsner Journal},
  volume = {17},
  number = {1},
  pages = {46--55},
  issn = {1524-5012},
  abstract = {BACKGROUND: Chronic antibody injury is a serious threat to allograft outcomes and is therefore the center of active research. In the continuum of allograft rejection, the development of antibodies plays a critical role. In recent years, an increased recognition of molecular and histologic changes has provided a better understanding of antibody-mediated rejection (AMR), as well as potential therapeutic interventions. However, several pathways are still unknown, which accounts for the lack of efficacy of some of the currently available agents that are used to treat rejection. METHODS: We review the current diagnostic criteria for AMR; AMR paradigms; and desensitization, treatment, and prevention strategies. RESULTS: Chronic antibody-mediated endothelial injury results in transplant glomerulopathy, manifested as glomerular basement membrane duplication, double contouring, or splitting. Clinical manifestations of AMR include proteinuria and a rise in serum creatinine. Current strategies for the treatment of AMR include antibody depletion with plasmapheresis (PLEX), immunoadsorption (IA), immunomodulation with intravenous immunoglobulin (IVIG), and T cell- or B cell-depleting agents. Some treatment benefits have been found in using PLEX and IA, and some small nonrandomized trials have identified some benefits in using rituximab and the proteasome inhibitor-based therapy bortezomib. More recent histologic follow-ups of patients treated with bortezomib have not shown significant benefits in terms of allograft outcomes. Furthermore, no specific treatment approaches have been approved by the US Food and Drug Administration. Other agents used for more difficult rejections include bortezomib and eculizumab (an anti-C5 monoclonal antibody). CONCLUSION: AMR is a fascinating field with ample opportunities for research and progress in the future. Despite the use of advanced techniques for the detection of human leukocyte antigen (HLA) or non-HLA donor-specific antibodies, alloimmune response remains an important barrier for successful long-term allograft function. Treatment of AMR with currently available therapies has produced a variety of results, some of them suboptimal, precluding the development of standardized protocols. New therapies are promising, but randomized controlled trials are needed to find surrogate markers and improve the efficacy of therapy.},
  langid = {english},
  pmcid = {PMC5349636},
  pmid = {28331448},
  keywords = {Desensitization-immunologic,graft rejection,HLA antigens,kidney transplantation,transplantation tolerance}
}

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}

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}

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}

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@article{thurman2019role,
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}

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}

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}