biocommons.seqrepo - 0.6.11

What's Changed

• switch deploy to use trusted publisher rather than token/password by @reece in https://github.com/biocommons/biocommons.seqrepo/pull/178
• Add shell script for autoupdate seqrepo by @icebert in https://github.com/biocommons/biocommons.seqrepo/pull/124
• build: require typing_extensions by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/182

New Contributors

• @icebert made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/124

Full Changelog: https://github.com/biocommons/biocommons.seqrepo/compare/0.6.10...0.6.11

- Python
Published by jsstevenson about 1 year ago

biocommons.seqrepo - 0.6.10

What's Changed

• style: apply updated style configs from template by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/141
• Do not preserve permissions when pulling an instance with rsync by @theferrit32 in https://github.com/biocommons/biocommons.seqrepo/pull/144
• fix: resolve type errors/add type annotations by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/151
• docs: add description of store() by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/152
• refactor: use importlib instead of pkg_resources by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/149
• fix: remove unneeded future imports by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/153
• chore: fix license classifier by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/154
• docs: add note about commit() by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/157
• fix: properly initialize file handler by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/160
• refactor: use Python 3 stdlib instead of six by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/164
• style: format with Ruff by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/158
• chore: add git ignore revs file by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/165
• build: require python>=3.10 by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/155
• refactor: resolve timezone-related python 3.12 deprecations by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/161
• chore: remove unused YAPF config by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/167
• feat: check rsync vs openrsync binary on CLI startup by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/172
• 176 resolve testing warnings by @reece in https://github.com/biocommons/biocommons.seqrepo/pull/177

Full Changelog: https://github.com/biocommons/biocommons.seqrepo/compare/0.6.9...0.6.10

- Python
Published by reece over 1 year ago

biocommons.seqrepo - 0.6.8

Bug fix

• fix: finish migrating from setup.cfg to pyproject.toml in order to install seqrepo cli by @reece in https://github.com/biocommons/biocommons.seqrepo/pull/139

Full Changelog: https://github.com/biocommons/biocommons.seqrepo/compare/0.6.7...0.6.8

- Python
Published by reece over 2 years ago

biocommons.seqrepo - 0.6.6

What's Changed

• Update README.md by @holtgrewe in https://github.com/biocommons/biocommons.seqrepo/pull/102
• docs: proposing to use default issue templates (#110) by @holtgrewe in https://github.com/biocommons/biocommons.seqrepo/pull/111
• #119: migrate to biocommons.example template by @reece in https://github.com/biocommons/biocommons.seqrepo/pull/120
• Citation file by @afrubin in https://github.com/biocommons/biocommons.seqrepo/pull/123
• Update README to support OSX users by @dylan-myome in https://github.com/biocommons/biocommons.seqrepo/pull/122
• Thread safety for FastaDir file handle cache by @theferrit32 in https://github.com/biocommons/biocommons.seqrepo/pull/117
• 112 make fastadir thread safe by @reece in https://github.com/biocommons/biocommons.seqrepo/pull/118

New Contributors

• @holtgrewe made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/102
• @afrubin made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/123
• @dylan-myome made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/122
• @theferrit32 made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/117

Full Changelog: https://github.com/biocommons/biocommons.seqrepo/compare/0.6.5...0.6.6

- Python
Published by reece over 2 years ago

biocommons.seqrepo - 0.6.7

What's Changed

• build: fix dynamic dependencies for newer setuptools versions by @jsstevenson in https://github.com/biocommons/biocommons.seqrepo/pull/133
• feat(130): Introduces SEQREPOFDCACHE_MAXSIZE env var by @kazmiekr in https://github.com/biocommons/biocommons.seqrepo/pull/131

New Contributors

• @jsstevenson made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/133
• @kazmiekr made their first contribution in https://github.com/biocommons/biocommons.seqrepo/pull/131

Full Changelog: https://github.com/biocommons/biocommons.seqrepo/compare/0.6.6...0.6.7

- Python
Published by andreasprlic over 2 years ago