py_neuromodulation - JOSS publication

Scientific Software - Peer-reviewed - Python
Published by timonmerk 5 months ago

py_neuromodulation - v0.1.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 5 months ago

py_neuromodulation - v0.1.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 7 months ago

py_neuromodulation - v0.1.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 9 months ago

py_neuromodulation - v0.1.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 10 months ago

py_neuromodulation - v0.1.0

What's Changed

• Major update in real-time stream handling
• Added react application for real-time processing and parametrization

New Contributors

• @alessiaca made their first contribution in https://github.com/neuromodulation/py_neuromodulation/pull/380

Full Changelog: https://github.com/neuromodulation/py_neuromodulation/compare/v0.0.8...v0.1.0

Scientific Software - Peer-reviewed - Python
Published by timonmerk 10 months ago

py_neuromodulation - v0.0.8

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 1 year ago

py_neuromodulation - v0.0.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 1 year ago

py_neuromodulation - 0.05

What's Changed

• Fix handling of dataframe input, issue #300 by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/301
• Move tox.ini contents to pyproject.toml by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/308
• Improve Github actions testing workflow by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/311
• Fix type hints, clean imports, and other errors reported by static analysis by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/305
• Add NMPreprocessor protocol and Preprocessors class by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/317
• Turn Feature abstract class into a Protocol and lazy load feature modules by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/307
• Add logging class by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/306
• Import all modules as lazily as possible by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/319
• Add mne lsl feature by @SamedVossberg in https://github.com/neuromodulation/py_neuromodulation/pull/323
• Refactor lsl stream by @SamedVossberg in https://github.com/neuromodulation/py_neuromodulation/pull/326
• Move LSL lib files inside module directory, increase OS support, fix docs build by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/328
• Generate results directly from featuredict instead of pd.Series by @toni-neurosc in https://github.com/neuromodulation/pyneuromodulation/pull/334
• Pydantic validation settings by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/329
• Timing lsl by @SamedVossberg in https://github.com/neuromodulation/py_neuromodulation/pull/337
• MNEFilter with fftconvolve by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/339
• Optimize Hjorth and LineLength calculation by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/340
• Add compatibility with Numpy 1.26 and 2.0 by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/341
• Fix docstrings by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/343
• MNE connectivity 2x speed-up by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/346
• Remove features dictionary as input to calcfeature by @toni-neurosc in https://github.com/neuromodulation/pyneuromodulation/pull/349
• Nm database by @SamedVossberg in https://github.com/neuromodulation/py_neuromodulation/pull/350

New Contributors

• @SamedVossberg made their first contribution in https://github.com/neuromodulation/py_neuromodulation/pull/323

Full Changelog: https://github.com/neuromodulation/py_neuromodulation/compare/v0.03...0.05

Scientific Software - Peer-reviewed - Python
Published by timonmerk over 1 year ago

py_neuromodulation - Bugfix build dependencies

What's Changed

• Fix handling of dataframe input, issue #300 by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/301

Full Changelog: https://github.com/neuromodulation/py_neuromodulation/compare/v0.03...0.0.4

Scientific Software - Peer-reviewed - Python
Published by timonmerk over 1 year ago

py_neuromodulation - Improved performances

What's Changed

• add Welch method by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/269
• Add plotter raw by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/270
• fix chused data selection by @timonmerk in https://github.com/neuromodulation/pyneuromodulation/pull/274
• rename pyneuromodulation consistent to nm by @timonmerk in https://github.com/neuromodulation/pyneuromodulation/pull/275
• add option to store psd for fft, stft and welch method by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/276
• Fix add targets by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/284
• Fix broken link by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/287
• Save CSVs with PyArrow by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/280
• Parallel processing pr by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/290
• Avoid use of Numpy nan statistics if possible by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/285
• Bursts feature performance improvement by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/286
• Sharpwaves performance fixes by @toni-neurosc in https://github.com/neuromodulation/py_neuromodulation/pull/288
• Add preprocessing filter by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/294
• Logging by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/298
• Add R-Map computer without Lead-Mapper by @timonmerk in https://github.com/neuromodulation/py_neuromodulation/pull/299

New Contributors

• @toni-neurosc made their first contribution in https://github.com/neuromodulation/py_neuromodulation/pull/287

Full Changelog: https://github.com/neuromodulation/py_neuromodulation/compare/v0.02...v0.03

Scientific Software - Peer-reviewed - Python
Published by timonmerk over 1 year ago

py_neuromodulation - Added bispectrum and fix burst computation

• #267 Thanks to @tsbinns added feature of bispectrum https://github.com/braindatalab/PyBispectra
• #266 Fixed bug in nm_bursts, s.t. s["bandpass_filter_settings"]["segment_lengths_ms"] restricts threshold computation
• add np.float64 cast s.t. mne notch_filter does not fail with int types

Scientific Software - Peer-reviewed - Python
Published by timonmerk about 2 years ago

py_neuromodulation - Preprint version

Preprint: https://doi.org/10.21203/rs.3.rs-3212709/v1 Documentation: https://py-neuromodulation.readthedocs.io/en/latest/index.html

Scientific Software - Peer-reviewed - Python
Published by timonmerk over 2 years ago