assemblebac - v2.0.2

v2.0.2 - [18/06/2025]

Fixed

• Fix process.shell in nextflow.config (#3416)

- Nextflow
Published by avantonder 12 months ago

assemblebac - v2.0.1

v2.0.1 - [18/03/2025]

Fixed

• Documentation updated
• DOI generated with Zenodo

- Nextflow
Published by avantonder about 1 year ago

assemblebac - v2.0.0

v2.0.0 - [13/03/25]

Added

• Significant recoding of pipeline to bring it more in line with current nf-core template

Fixed

• Update Bakta from version 1.9.4 to version 1.10.4
• Update mlst from version 2.19.0 to version 2.23.0
• Update MultiQC from version 1.14 to version 1.25.1

- Nextflow
Published by avantonder about 1 year ago

assemblebac - v1.2.1

v1.2.1 - [19/07/24]

Fixed

• shebang in check_samplesheet.py changed to python3 to work on systems with no 'python' alias
• Bakta updated to version 1.9.4 to fix AMRfinder bug with database
• Bakta database installation instructions updated in README.md to avoid AMRfinder bug

- Nextflow
Published by avantonder almost 2 years ago

assemblebac - v1.2

v1.2 - [07/07/23]

Added

• Parse mlst outputs to produce summary tsv in metadata directory

Fixed

• Fix CheckM2 parser script so summary tsv only contains single header line
• Add Quast outputs to multqc html report
• Edit output document to add mlst summary tsv

- Nextflow
Published by avantonder almost 3 years ago

assemblebac - v1.1

v1.1 - [08/06/23]

• Fix CPU requirements for input check

- Nextflow
Published by avantonder almost 3 years ago

assemblebac - v1.0

v1.0 - [17/03/23]

• First release of the pipeline

- Nextflow
Published by avantonder about 3 years ago