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africa-metaanalysis-archive

This is the archive for code used to generate results reported in the paper titled: A META-ANALYSIS OF GUT MICROBIOME RESEARCH IN MALNOURISHED AFRICAN POPULATIONS: A NATURAL LANGAUGE PROCESSING APPROACH

https://github.com/monica-mweetwa/africa-metaanalysis-archive

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
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Last synced: 6 months ago · JSON representation ·

Repository

This is the archive for code used to generate results reported in the paper titled: A META-ANALYSIS OF GUT MICROBIOME RESEARCH IN MALNOURISHED AFRICAN POPULATIONS: A NATURAL LANGAUGE PROCESSING APPROACH

Basic Info
  • Host: GitHub
  • Owner: Monica-Mweetwa
  • Language: R
  • Default Branch: main
  • Size: 3.74 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed 10 months ago
Metadata Files
Readme Citation

README.md

Africa-MetaAnalysis-Archive

This is the archive for code used to generate results reported in the paper titled: A META-ANALYSIS OF GUT MICROBIOME RESEARCH IN MALNOURISHED AFRICAN POPULATIONS: A NATURAL LANGAUGE PROCESSING APPROACH

  • The first step was extraction of microbes from json files which was exceuted in python using the code file: Extract_annotations.ipynb
  • The next step was summarisation of study charcterisrtics implemented in pythin using the code file: PythonAnnotation_Dec.ipynb
  • Phylogenetic tree creation and annotation was done in 2 ways:
  • A) Phylogenetic tree of all studies included stratified by region and sequencing method: PhyloTrees_12052025.Rmd
  • B) Phylogenetic tree of all studies that compared healthy and undernourished children: CaCoPhyPlot12052025.R

The imput data used is stored in the Data folder. * The data used for phylogenetic tree constraction is stored in the 'Data/AllStudies' folder * The case control analysis used data stored in the 'Data/CaseControlAnalysis'

Owner

  • Name: Monica
  • Login: Monica-Mweetwa
  • Kind: user

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Africa-MetaAnalysis Code
message: >-
  If you use this dataset, please cite it using the metadata
  from this file.
type: dataset
authors:
  - given-names: Monica Ntwakuyanga
    family-names: Mweetwa
    email: monica@tropgan.com
    affiliation: University of Zambia
    orcid: 'https://orcid.org/0000-0003-2679-3697'
repository-code: >-
  https://github.com/Monica-Mweetwa/Africa-MetaAnalysis-Archive.git

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