metagenomics-analysis
Data Processing and Visualization for Metagenomics
Science Score: 64.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 5 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
19 of 123 committers (15.4%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Keywords
carpentries-lab
english
lesson
life-sciences
metagenomics
peer-reviewed
stable
Keywords from Contributors
carpentries-incubator
prediction
pre-alpha
data-leakage
bootstrapping
auroc
training
software-carpentry
ansible
cwl
Last synced: 6 months ago
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JSON representation
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Repository
Data Processing and Visualization for Metagenomics
Basic Info
- Host: GitHub
- Owner: carpentries-lab
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://carpentries-lab.github.io/metagenomics-analysis/
- Size: 28.4 MB
Statistics
- Stars: 13
- Watchers: 8
- Forks: 33
- Open Issues: 1
- Releases: 1
Topics
carpentries-lab
english
lesson
life-sciences
metagenomics
peer-reviewed
stable
Created over 5 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Contributing
Funding
License
Code of conduct
Citation
Authors
README.md
Data Processing and Visualization for Metagenomics
A lesson to learn how to carry out a metagenomics bioinformatic pipeline. This lesson is part of the Metagenomics Workshop
Contribution
Make a suggestion or correct an error by raising an Issue.
Code of Conduct
All participants should agree to abide by the Data Carpentry Code of Conduct.
Maintainer(s)
Current maintainers of this lesson are
- Nelly Selem Mojica
- Claudia Zirion Martinez
- Aaron Espinosa Jaime
- Jose Abel Lovaco Flores
- Diego Garfias Gallegos
- Jesus Abraham Avelar Rivas
Authors
A list of contributors to the lesson can be found in AUTHORS
Citation
Please cite as:
Claudia Zirión Martínez; Diego Garfias Gallegos; Tania Vanessa Arellano Fernández; Aarón Espinosa Jaime; Edder D Bustos Díaz; José Abel Lovaco Flores; Luis Gerardo Tejero Gómez; J Abraham Avelar Rivas; Nelly Sélem (March , 2023) A Data Carpentry- Style Metagenomics Workshop https://doi.org/10.5281/zenodo.7713386
Owner
- Name: The Carpentries Lab
- Login: carpentries-lab
- Kind: organization
- Repositories: 3
- Profile: https://github.com/carpentries-lab
Citation (CITATION)
Please cite as: Nelly Sélem Mojica; Diego Garfias Gallegos; Claudia Zirión Martínez; Jesús Abraham Avelar Rivas; Aaron Jaime Espinosa; Abel Lovaco Flores; Tania Vanessa Arellano Fernandez (2022, Jan). Metagenomics for Software Carpentry lesson, Jan 2022. Zenodo. https://doi.org/10.5281/zenodo.4285900
GitHub Events
Total
- Watch event: 4
- Member event: 1
- Push event: 40
- Pull request event: 1
- Fork event: 6
Last Year
- Watch event: 4
- Member event: 1
- Push event: 40
- Pull request event: 1
- Fork event: 6
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Nelly Sélem | n****5@h****m | 610 |
| Greg Wilson | g****n@s****g | 439 |
| Czirion | 7****n | 311 |
| Diego Garfias Gallegos | 6****e | 201 |
| Raniere Silva | r****e@r****m | 197 |
| François Michonneau | f****u@g****m | 129 |
| Maxim Belkin | m****n@g****m | 87 |
| Vanessaarfer | 5****r | 64 |
| J. Abel Lovaco | 6****4 | 59 |
| aaronejaime | 4****e | 38 |
| AbrahamAvelar | j****r@g****m | 38 |
| BetterLabMx | 4****x | 27 |
| Abigail Cabunoc Mayes | a****c@g****m | 25 |
| Andy Boughton | a****t@g****m | 23 |
| Katrin Leinweber | 9****r | 21 |
| Rémi Emonet | r****i@h****m | 21 |
| W. Trevor King | w****g@t****s | 20 |
| EdderDaniel | 4****l | 15 |
| Aaron O'Leary | a****y@g****m | 14 |
| Erin Becker | e****r@g****m | 12 |
| maneesha sane | m****e@g****m | 10 |
| Joao Rodrigues | j****s@g****m | 10 |
| Chris Erdmann | c****s@c****g | 9 |
| Andy Boughton | p****t@g****m | 8 |
| DavidAlberto | 4****o | 7 |
| Jonah Duckles | j****h@d****g | 6 |
| Joseph Stachelek | j****a | 5 |
| drowningpug | 4****g | 5 |
| Rayna M Harris | r****s | 5 |
| John Blischak | j****k@g****m | 5 |
| and 93 more... | ||
Committer Domains (Top 20 + Academic)
idyll.org: 2
manchester.ac.uk: 2
uni-konstanz.de: 1
asu.edu: 1
utoronto.ca: 1
llnl.gov: 1
email.arizona.edu: 1
berkeley.edu: 1
fz-juelich.de: 1
banaszkiewicz.org: 1
sharelatex.com: 1
duckles.org: 1
carpentries.org: 1
tremily.us: 1
heeere.com: 1
rgaiacs.com: 1
software-carpentry.org: 1
sesync.org: 1
sdruskat.net: 1
dundee.ac.uk: 1
st-andrews.ac.uk: 1
ucr.edu: 1
aucegypt.edu: 1
nist.gov: 1
brown.edu: 1
software.ac.uk: 1
ucdavis.edu: 1
imperial.ac.uk: 1
alum.mit.edu: 1
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 59
- Total pull requests: 25
- Average time to close issues: 6 months
- Average time to close pull requests: 2 days
- Total issue authors: 6
- Total pull request authors: 16
- Average comments per issue: 1.64
- Average comments per pull request: 0.2
- Merged pull requests: 24
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 4
- Average time to close issues: N/A
- Average time to close pull requests: 1 day
- Issue authors: 1
- Pull request authors: 3
- Average comments per issue: 0.0
- Average comments per pull request: 0.5
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Czirion (39)
- nselem (10)
- AbrahamAvelar (6)
- tobyhodges (3)
- cgaylord-gwu (1)
- samnooij (1)
Pull Request Authors
- IvanHpina (3)
- samnooij (3)
- kerchner (3)
- DavidAlberto (2)
- tobyhodges (2)
- karinaeg (2)
- Bedxxe (2)
- DaianaGuerrero (1)
- fabel134 (1)
- valeriafloral (1)
- JesseKerkvliet (1)
- lugetego (1)
- annajiat (1)
- NoeGarciaC (1)
- jmvillalobos (1)
Top Labels
Issue Labels
high priority (8)
status:in progress (5)
status:wait (2)
type:bug (1)
type:discussion (1)
status:need more info (1)
Pull Request Labels
Dependencies
requirements.txt
pypi
- PyYAML *
- update-copyright *
Gemfile
rubygems
- github-pages >= 0 development