https://github.com/juke34/eukaprot_in_publicsoilmetag

Science Score: 10.0%

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Low similarity (2.6%) to scientific vocabulary

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Host: GitHub
Owner: Juke34
License: gpl-3.0
Default Branch: main
Size: 66.4 KB

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Fork of CaroleBelliardo/EukaProt_in_PublicSoilMetag

Created over 3 years ago · Last pushed almost 4 years ago

https://github.com/Juke34/EukaProt_in_PublicSoilMetag/blob/main/

# EukaProt_in_PublicSoilMetag

Bioinformatic python3 scripts to predict eukaryotic proteins in Metagenome-Assembled Genomes. 


Dependances: 

  Python3 packages : 
   - numpy, 
   - pandas,
   - biopython,
   - pyfasta,
   - time,
   - argparse,
   - pprint
    

  This workflow require the following software : 
   - KRAKEN2 : contig taxonomic classification, 
   - AUGUSTUS : protein prediction, 
   - DIAMOND : protein taxonomic annotation,
   - BUSCO : protein prediction quality. 



[![DOI](https://zenodo.org/badge/385688623.svg)](https://zenodo.org/badge/latestdoi/385688623)

Owner

Name: Jacques Dainat
Login: Juke34
Kind: user
Location: Montpellier, France
Company: IRD

ecosyste.ms

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