hyppo

Python package for multivariate hypothesis testing

Science Score: 64.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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DOI references
✓
Academic publication links
Links to: arxiv.org
✓
Committers with academic emails
4 of 24 committers (16.7%) from academic institutions
○
Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (14.8%) to scientific vocabulary

Keywords

data-science hacktoberfest hypothesis-testing independence ksample-testing python

Keywords from Contributors

networks graph-statistics continual-learning decision-trees deep-neural-networks domain-adaptation random-forests transfer-learning network-simulation hacking

Last synced: 4 months ago · JSON representation ·

Repository

Python package for multivariate hypothesis testing

Basic Info

Host: GitHub
Owner: neurodata
License: mit-0
Language: Python
Default Branch: main
Homepage: https://hyppo.neurodata.io/
Size: 33.5 MB

Statistics

Stars: 231
Watchers: 5
Forks: 92
Open Issues: 46
Releases: 14

Topics

data-science hacktoberfest hypothesis-testing independence ksample-testing python

Created over 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Contributing License Code of conduct Citation

hyppo

hyppo (HYPothesis Testing in PythOn, pronounced "Hippo") is an open-source software package for multivariate hypothesis testing. We decided to develop hyppo for the following reasons:

With the increase in the amount of data in many fields, hypothesis testing for high-dimensional and nonlinear data is important.
Libraries in R exist, but their interfaces are inconsistent, and most are not available in Python.

hyppo intends to be a comprehensive multivariate hypothesis testing package that runs on all major versions of operating systems. It also includes novel tests not found in other packages. It is quick to install and free of charge. If you need to use multivariate hypothesis testing, be sure to give hyppo a try!

Website: https://hyppo.neurodata.io/

Installation

Dependencies

hyppo requires the following:

python (>= 3.8)
numba (>= 0.46)
numpy (>= 1.17)
scipy (>= 1.4.0)
scikit-learn (>= 0.22)
joblib (>= 0.17.0)
statsmodels (>= 0.14.4)
patsy (>= 0.5.1)
future (>=1.0.0)

User installation

The easiest way to install hyppo is using pip.

sh pip install hyppo

To upgrade to a newer release, use the --upgrade flag.

sh pip install --upgrade hyppo

The documentation includes more detailed installation instructions. hyppo is free software; you can redistribute it and/or modify it under the terms of the license.

Release Notes

See the release notes for a history of notable changes to hyppo.

Development

We welcome new contributors of all experience levels. The hyppo community's goals are to be helpful, welcoming, and effective. The contributor guide has detailed information about contributing code, documentation, and tests.

Official source code: https://github.com/neurodata/hyppo/tree/main/hyppo
Download releases: https://pypi.org/project/hyppo/
Issue tracker: https://github.com/neurodata/hyppo/issues

Note: We have recently moved our benchmarks (with relevant figure replication code for our papers) folder to a new repo! We aim to add test development code and paper figure replication codes there, and we will add relevant tests (with tutorials) to hyppo.

Contributors

Thanks goes to these wonderful people:

Made with contrib.rocks.

Project History

hyppo is a rebranding of mgcpy, which was founded in November 2018. mgcpy was designed and written by @tpsatish95, @sampan501, @junhaobearxiong, @sundaysundya, @ananyas713, and @ronakdm. hyppo was designed and written by @sampan501 and first released in February 2020.

Owner

Name: neurodata
Login: neurodata
Kind: organization
Email: admin@neurodata.io
Location: everywhere

Website: https://neurodata.io
Repositories: 175
Profile: https://github.com/neurodata

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: hyppo
message: 'If you use this software, please cite it as below'
type: software
authors:
  - given-names: Sambit
    family-names: Panda
    email: spanda3@Jhu.edu
    affiliation: Johns Hopkins University
    orcid: 'https://orcid.org/0000-0001-8455-4243'
  - orcid: 'https://orcid.org/0000-0001-6115-719X'
    given-names: Satish
    family-names: Palaniappan
    affiliation: Johns Hopkins University
  - given-names: Eric W.
    family-names: Bridgeford
    affiliation: Johns Hopkins School of Public Health
  - given-names: Ronak
    family-names: Mehta
    affiliation: Johns Hopkins University
  - affiliation: University of Delaware
    given-names: Cencheng
    family-names: Shen
  - given-names: Joshua T.
    family-names: Vogelstein
    affiliation: Johns Hopkins University
    orcid: 'https://orcid.org/0000-0003-2487-6237'
identifiers:
  - type: doi
    value: 10.48550/arXiv.1907.02088
    description: arXiv
repository-code: 'https://github.com/neurodata/hyppo/tree/main'
url: 'https://hyppo.neurodata.io/'
repository: 'https://github.com/neurodata/hyppo-papers'
repository-artifact: 'https://github.com/neurodata/mgcpy-old'
abstract: >-
  We introduce hyppo, a unified library for performing
  multivariate hypothesis testing, including independence,
  two-sample, and k-sample testing. While many multivariate
  independence tests have R packages available, the
  interfaces are inconsistent and most are not available in
  Python. hyppo includes many state of the art multivariate
  testing procedures. The package is easy-to-use and is
  flexible enough to enable future extensions.
keywords:
  - Python
  - multivariate
  - independence
  - k-sample
  - hypothesis
preferred-citation:
  type: article
  authors:
  - family-names: "Panda"
    given-names: "Sambit"
    orcid: "https://orcid.org/0000-0001-8455-4243"
  - family-names: "Palaniappan"
    given-names: "Satish"
  - family-names: "Bridgeford"
    given-names: "Eric W."
  - family-names: "Mehta"
    given-names: "Ronak"
  - family-names: "Shen"
    given-names: "Cencheng"
  - family-names: "Vogelstein"
    given-names: "Joshua T."
    orcid: "https://orcid.org/0000-0003-2487-6237"
  doi: "10.48550/arXiv.1907.02088"
  journal: "arXiv"
  month: 9
  # start: 1 # First page number
  # end: 10 # Last page number
  title: "hyppo: A Multivariate Hypothesis Testing Python Package"
  # issue: 1
  # volume: 1
  year: 2021

GitHub Events

Total

Create event: 3
Release event: 1
Issues event: 7
Watch event: 14
Delete event: 2
Member event: 2
Issue comment event: 40
Push event: 9
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 18
Fork event: 9

Last Year

Create event: 3
Release event: 1
Issues event: 7
Watch event: 14
Delete event: 2
Member event: 2
Issue comment event: 40
Push event: 9
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 18
Fork event: 9

Committers

Last synced: 10 months ago

All Time

Total Commits: 330
Total Committers: 24
Avg Commits per committer: 13.75
Development Distribution Score (DDS): 0.164

Past Year

Commits: 15
Committers: 5
Avg Commits per committer: 3.0
Development Distribution Score (DDS): 0.333

Top Committers

Name	Email	Commits
Sambit Panda	s**1@g**m	276
allcontributors[bot]	4****]	14
sampan501	s**3@j**u	11
Ronan Perry	r**y@g**m	3
SUKI	I**2@g**m	3
Vivek Gopalakrishnan	v**4@j**u	2
Alex1-ai	7****i	2
Jaewon Chung	j**8@g**m	2
Ronak Mehta	r**3@j**u	2
Satarupa Deb	8****D	1
Riccardo Orsi	1****7	1
PoojaMandal	6****l	1
Jennifer Tam	8****m	1
Jayanta Dey	5****4	1
Haoyin Xu	h**u@g**m	1
Bijan Varjavand	b**d@g**m	1
Benjamin Pedigo	b**o@g**m	1
Alexander Oakley	2****a	1
Shruti Naik	0**3@n**n	1
Vatsalya Vyas	1****s	1
alyakin314	a**4@g**m	1
dependabot[bot]	4****]	1
ohpraveenprasad	1****d	1
saivythik	6****k	1

Committer Domains (Top 20 + Academic)

jhu.edu: 3 nirmauni.ac.in: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 61
Total pull requests: 117
Average time to close issues: 6 months
Average time to close pull requests: about 2 months
Total issue authors: 31
Total pull request authors: 40
Average comments per issue: 3.25
Average comments per pull request: 2.58
Merged pull requests: 86
Bot issues: 0
Bot pull requests: 34

Past Year

Issues: 6
Pull requests: 20
Average time to close issues: 30 days
Average time to close pull requests: 28 days
Issue authors: 4
Pull request authors: 8
Average comments per issue: 2.67
Average comments per pull request: 2.5
Merged pull requests: 13
Bot issues: 0
Bot pull requests: 2

View more stats

Top Authors

Issue Authors

sampan501 (14)
bdpedigo (6)
rflperry (4)
oakla (3)
adam2392 (3)
PSSF23 (2)
ebridge2 (2)
srecupe2 (2)
ameliecr (2)
darsh-patel (2)
victoris93 (1)
j1c (1)
Rayerdyne (1)
jovo (1)
transpersonify (1)

Pull Request Authors

sampan501 (30)
allcontributors[bot] (28)
oakla (7)
ricor07 (6)
dependabot[bot] (5)
j1c (4)
Alex1-ai (3)
tjoab (2)
ebridge2 (2)
ohpraveenprasad (2)
darsh-patel (2)
harsh204016 (2)
LaggyMan (2)
zdbzdb123123 (2)
vikram-8290 (2)

Top Labels

Issue Labels

enhancement (23) bug (21) ndd (15) documentation (11) good first issue (5) question (4) hyppo.ksample (4) help wanted (1) hyppo.discrim (1)

Pull Request Labels

documentation (3) hyppo.independence (3) bug (2) enhancement (2) dependencies (2) python (2)

Packages

Total packages: 2
Total downloads:
- pypi 152,370 last-month
Total docker downloads: 80

Total dependent packages: 3
(may contain duplicates)
Total dependent repositories: 11
(may contain duplicates)
Total versions: 15
Total maintainers: 1

pypi.org: hyppo

A comprehensive independence testing package

Homepage: https://github.com/neurodata/hyppo
Documentation: https://hyppo.readthedocs.io/
License: MIT License
Latest release: 0.5.2
published 8 months ago

Versions: 14
Dependent Packages: 3
Dependent Repositories: 11
Downloads: 152,370 Last month
Docker Downloads: 80

Rankings

Docker downloads count: 3.0%

Downloads: 3.8%

Average: 4.2%

Dependent repos count: 4.4%

Stargazers count: 4.7%

Forks count: 4.7%

Dependent packages count: 4.8%

Maintainers (1)

sampanda501

Last synced: 4 months ago

conda-forge.org: hyppo

Homepage: https://hyppo.neurodata.io/
License: MIT
Latest release: 0.3.2
published over 3 years ago

Versions: 1
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Forks count: 27.4%

Stargazers count: 27.6%

Dependent repos count: 34.0%

Average: 35.0%

Dependent packages count: 51.2%

Last synced: 4 months ago

Dependencies

dev-requirements.txt pypi

autograd * development
black * development
codecov * development
coverage * development
numba ==0.49.1 development
pytest * development
pytest-cov * development
twine * development

docs/requirements.txt pypi

docutils ==0.17.1
ipykernel ==5.4.3
ipython ==7.31.1
matplotlib *
myst_parser *
nbsphinx ==0.8.0
numpydoc ==0.7.0
pydata-sphinx-theme ==0.7.1
seaborn *
sphinx ==4.0.2
sphinx-gallery ==0.8.2
sphinx_sitemap *
sphinxcontrib-bibtex >=2.2.0
sphinxcontrib-rawfiles ==0.1.1

requirements.txt pypi

autograd >=1.3
joblib >=0.17.0
numba >=0.46
numpy >=1.17,<=1.23.5
scikit-learn >=0.22
scipy >=1.4.0

setup.py pypi

hyppo

Science Score: 64.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

hyppo

Installation

Dependencies

User installation

Release Notes

Development

Contributors

Project History

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: hyppo

Rankings

Maintainers (1)

conda-forge.org: hyppo

Rankings

Dependencies