gdtbioinfo-nf-mosaicism - Version 1.1.0

This version adds the implementation of mutect2 to the pipeline.

What's Changed

• Update dev to changes in main by @yocra3 in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/27
• Updated modules to new structure, added full path to quay.io bioconta… by @pedro-garridor in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/31
• Add chrom-sizes test file by @pedro-garridor in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/32
• New testdata for mutect2 by @pedro-garridor in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/34
• Mutect2 implementation by @pedro-garridor in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/33
• Issues templates by @paulaidt in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/35
• Added new PR template and guidelines by @paulaidt in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/36
• Implementation of a intersection for the variant calling tools (from dev branch) by @martasevilla in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/49
• Add previous main files to dev by @yocra3 in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/50
• Doc update by @pedro-garridor in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/76
• Add mutect2 implementation by @yocra3 in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/77

New Contributors

• @pedro-garridor made their first contribution in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/31
• @paulaidt made their first contribution in https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/pull/35

Full Changelog: https://github.com/CIBERER/GdTBioinfo-nf-mosaicism/compare/1.0.0...1.1.0

- Nextflow
Published by yocra3 over 1 year ago

gdtbioinfo-nf-mosaicism - v1.0.0

Initial version of mosaicism_nextflow

• Detects mosaic variants using VarDictJava and VarScan
• Compatibility with Docker, Singularity and Conda.

- Nextflow
Published by yocra3 about 3 years ago