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brainspace

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

https://github.com/mica-mni/brainspace

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.3%) to scientific vocabulary

Keywords from Contributors

neuroimaging brain-imaging
Last synced: 10 months ago · JSON representation

Repository

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

Basic Info
Statistics
  • Stars: 225
  • Watchers: 9
  • Forks: 79
  • Open Issues: 12
  • Releases: 11
Created almost 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License Citation Codeowners

README.rst 

====================
BrainSpace
====================

BrainSpace is a lightweight cross-platform toolbox primarily intended 
for macroscale gradient mapping and analysis of 
neuroimaging and connectome level data. The current version 
of BrainSpace is available in Python and MATLAB, programming 
languages widely used by the neuroimaging and network neuroscience 
communities. The toolbox also contains several maps that allow for 
exploratory analysis of gradient correspondence with other 
brain-derived features, together with tools to generate spatial null models.

For installation instructions, examples and documentation of BrainSpace see
our `documentation `_.

Happy gradient analysis! 

License
-----------

The BrainSpace source code is available under the BSD (3-Clause) license.

Support
-----------

If you have problems installing the software or questions about usage 
and documentation, or something else related to BrainSpace, 
you can post to the Issues section of our `repository `_.

Paper
-----------

If you consider using BrainSpace, please cite our manuscript: 
Vos de Wael R, Benkarim O, Paquola C, Lariviere S, Royer J, Tavakol S, Xu T, Hong S, Langs G, Valk S, Misic B, Milham M, Margulies D, Smallwood J, Bernhardt B (2020). BrainSpace: a toolbox for the analysis of macroscale gradients in neuroimaging and connectomics datasets. Commun Biol 3, 103.

Core development team
-----------------------

* Reinder Vos de Wael, MICA Lab - Montreal Neurological Institute
* Oualid Benkarim, MICA Lab - Montreal Neurological Institute
* Boris Bernhardt, MICA Lab - Montreal Neurological Institute

Owner

  • Name: MICA-MNI
  • Login: MICA-MNI
  • Kind: organization
  • Location: Montreal

Multimodal Imaging and Conenctome Analysis Lab at the Montreal Neurological Institute.

GitHub Events

Total
  • Create event: 11
  • Release event: 16
  • Issues event: 8
  • Watch event: 45
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 9
  • Pull request event: 4
  • Fork event: 5
Last Year
  • Create event: 11
  • Release event: 16
  • Issues event: 8
  • Watch event: 45
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 9
  • Pull request event: 4
  • Fork event: 5

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 554
  • Total Committers: 13
  • Avg Commits per committer: 42.615
  • Development Distribution Score (DDS): 0.525
Past Year
  • Commits: 26
  • Committers: 3
  • Avg Commits per committer: 8.667
  • Development Distribution Score (DDS): 0.115
Top Committers
Name Email Commits
oualid b****7@g****m 263
Reinder Vos de Wael r****l@g****m 166
oualidbenkarim L****p@r****5 49
Enning Yang e****0@g****m 23
margulies d****s@g****m 19
Boris Bernhardt b****t@g****m 16
Victoria Shevchenko 4****3 7
Dan Gale d****e@g****m 4
josemariamoreira j****a@g****m 2
Ghislain Vaillant g****l 2
manea006 7****6 1
Hao-Ting Wang h****w@g****m 1
Anibal Sólon a****n@g****m 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 82
  • Total pull requests: 53
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 63
  • Total pull request authors: 16
  • Average comments per issue: 2.26
  • Average comments per pull request: 0.47
  • Merged pull requests: 46
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 11
  • Pull requests: 7
  • Average time to close issues: 14 days
  • Average time to close pull requests: 6 days
  • Issue authors: 11
  • Pull request authors: 4
  • Average comments per issue: 1.09
  • Average comments per pull request: 0.43
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • ReinderVosDeWael (4)
  • acamargofb (4)
  • sophiatinh (3)
  • manea006 (3)
  • danjgale (2)
  • victoris93 (2)
  • kristianeschenburg (2)
  • Bronte-Mckeown (2)
  • HusBunia (2)
  • Yvonneser (2)
  • AstonshisL (2)
  • KongKongKongMaster (2)
  • StephDocTUM (2)
  • debinz (1)
  • DimuthuHemachandra (1)
Pull Request Authors
  • ReinderVosDeWael (23)
  • OualidBenkarim (10)
  • zihuaihuai (8)
  • victoris93 (3)
  • ghisvail (2)
  • jordandekraker (2)
  • margulies (2)
  • manea006 (1)
  • anibalsolon (1)
  • htwangtw (1)
  • rcruces (1)
  • jbburt (1)
  • PeerHerholz (1)
  • saratheriver (1)
  • Rui-0122 (1)
Top Labels
Issue Labels
MATLAB (7) bug (6) documentation (5) python (2) question (2) enhancement (2) good first issue (1)
Pull Request Labels
enhancement (4) python (2) MATLAB (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 4,641 last-month
  • Total docker downloads: 10
  • Total dependent packages: 8
  • Total dependent repositories: 13
  • Total versions: 12
  • Total maintainers: 3
pypi.org: brainspace

Cortical gradients and beyond

  • Versions: 12
  • Dependent Packages: 8
  • Dependent Repositories: 13
  • Downloads: 4,641 Last month
  • Docker Downloads: 10
Rankings
Dependent packages count: 1.4%
Docker downloads count: 3.8%
Dependent repos count: 4.0%
Average: 4.8%
Forks count: 5.3%
Stargazers count: 5.8%
Downloads: 8.3%
Maintainers (3)
Oualid reindervdw zihuaihuai
Last synced: 11 months ago

Dependencies

.github/workflows/github_actions_ci.yml actions
  • GabrielBB/xvfb-action v1.5 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • matlab-actions/run-tests v0 composite
  • matlab-actions/setup-matlab v0 composite
.github/workflows/python_coverage.yml actions
  • actions/checkout v1 composite
  • actions/setup-python master composite
  • codecov/codecov-action v1 composite
.github/workflows/tagged_release.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
  • marvinpinto/action-automatic-releases latest composite
  • pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite
docs/requirements.txt pypi
  • sphinx-gallery *
  • sphinx_rtd_theme *
requirements.txt pypi
  • matplotlib >=2.0.0
  • nibabel *
  • nilearn *
  • numpy >=1.11.0
  • scikit-learn >=0.22.0
  • scipy >=0.17.0
  • vtk >=8.1.0