Recent Releases of agatta
agatta - Agatta v0.9.6
New features:
- Add optional flag --nsupport for node support computation based on triplet in analysis pipeline.
- Node support computation based on triplet now also working for consensus strict and reduced cladistic consensus.
- Warning message when detailed_tripdec computed but parallel is not set to no.
- Python
Published by vrineau about 1 year ago
agatta - Agatta v0.9.4
New features:
- Total evidence function added through analysis pipeline. For the analysis function, it is now possible to analyse several input files. These files can be mixed between formats.
- Python
Published by vrineau about 1 year ago
agatta - Agatta v0.9.1
New features:
- Adding Wilkinson 1995 procedure for computing reduced cladistic consensus
- warning when hierarchical matrix doesn't has the correct extension with the hmatrix command
- Hierarchical matrix can use empty cells instead of quotation marks for missing data
Bugs corrected:
- free-paralogy subtrees now appear in the output file.poly. New output in the output file.poly file (+ verbose mode)
- bug for heuristic search using wtreeqmc
Wilkinson, M. (1995). More on Reduced Consensus Methods. Systematic Biology, 44(3), 435‑439. https://doi.org/10.1093/sysbio/44.3.435
- Python
Published by vrineau over 1 year ago
agatta - Agatta v0.9.0
New features: - Add node support to .tre output files, - Add wtreeqmc support, - Handling the empty nodes error when reading newick files and hmatrix.
Bugs corrected: - autapomorphy error message corrected, - RNRI bug without character set specifications corrected.
- Python
Published by vrineau over 1 year ago
agatta - Agatta v0.8.1
Bug corrected for standard_tripdec function.
- Python
Published by vrineau over 2 years ago