https://github.com/kalilamali/fishdna_pipeline
Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
○codemeta.json file
-
○.zenodo.json file
-
○DOI references
-
✓Academic publication links
Links to: ncbi.nlm.nih.gov -
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Keywords
Repository
Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
This repository has an step-by-step approach in the analysis of BioProject PRJNA386519 Rainbow trout Oncorhynchus mykiss DNA from raw reads to population insights.
This work was presented as a poster session as an oral examination for the Technical University of Denmark (DTU) course 25334 Genomic methods in breeding and management of aquatic living resources.
LICENSE
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Owner
- Name: Karen Loaiza (KLOC)
- Login: kalilamali
- Kind: user
- Location: Denmark
- Company: Statens Serum Institut
- Website: https://www.linkedin.com/in/karen-loaiza/
- Twitter: kalilamali
- Repositories: 30
- Profile: https://github.com/kalilamali
🧬👩🏻💻📊 Bioinformatician working on bacterial genomics at @SSI_dk
GitHub Events
Total
Last Year
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| kalilamali | k****i@h****m | 7 |
| Karen | 4****i | 4 |
Issues and Pull Requests
Last synced: about 2 years ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0