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Recent Releases of ibl-neuropixel

ibl-neuropixel - 1.8.1

What's Changed

  • Bad channel detection fix by @GaelleChapuis in https://github.com/int-brain-lab/ibl-neuropixel/pull/63 See release_notes.md

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.8.0...1.8.1

- Python
Published by oliche 12 months ago

ibl-neuropixel - 1.8.0

See release notes !

- Python
Published by oliche about 1 year ago

ibl-neuropixel -

What's Changed

  • ibldsp.utils.sync_timestamps performance no longer impacted by offset by @k1o0 in https://github.com/int-brain-lab/ibl-neuropixel/pull/56
  • added choice of metadata file to decopmress to scratch function by @grg2rsr in https://github.com/int-brain-lab/ibl-neuropixel/pull/58
  • 1.7.0 release candidate by @oliche in https://github.com/int-brain-lab/ibl-neuropixel/pull/61

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.6.2...1.7.1

- Python
Published by mayofaulkner about 1 year ago

ibl-neuropixel - 1.7.0

- Python
Published by oliche about 1 year ago

ibl-neuropixel - 1.6.2

What's Changed

  • hotfix 1.6.2: add the ricker function to utils by @oliche in https://github.com/int-brain-lab/ibl-neuropixel/pull/55

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.6.1...1.6.2

- Python
Published by oliche over 1 year ago

ibl-neuropixel - 1.6.1

What's Changed

  • Extract waveform cbin outputs file list by @oliche in https://github.com/int-brain-lab/ibl-neuropixel/pull/54

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.6.0...1.6.1

- Python
Published by oliche over 1 year ago

ibl-neuropixel - 1.6.0

What's Changed

  • one.alf.files -> one.alf.path by @k1o0 in https://github.com/int-brain-lab/ibl-neuropixel/pull/49
  • Numpy 2.0 drops support for NaN and NAN by @k1o0 in https://github.com/int-brain-lab/ibl-neuropixel/pull/50

New Contributors

  • @k1o0 made their first contribution in https://github.com/int-brain-lab/ibl-neuropixel/pull/49

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.5.0...1.6.0

- Python
Published by oliche over 1 year ago

ibl-neuropixel - Ordered channels

What's Changed

  • channel reordering fix by @grg2rsr in https://github.com/int-brain-lab/ibl-neuropixel/pull/48

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.4.0...1.5.0

- Python
Published by oliche over 1 year ago

ibl-neuropixel - 1.4.0

What's Changed

  • Optim waveforms by @oliche in https://github.com/int-brain-lab/ibl-neuropixel/pull/44

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.3.2...1.4.0

- Python
Published by oliche over 1 year ago

ibl-neuropixel - 1.3.2

  • Hotfix for WaveformsLoader label ids

https://github.com/int-brain-lab/ibl-neuropixel/compare/1.3.1...1.3.2

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.3.1

  • Hotfix for running tests with PyPI install

https://github.com/int-brain-lab/ibl-neuropixel/compare/1.3.0...1.3.1

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.3.0

  • Add support for NPultra high-density probes
  • NumPy and SciPy version floors

https://github.com/int-brain-lab/ibl-neuropixel/compare/1.2.1...1.3.0

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.2.1

  • Fix waveform_extraction.extract_wfs_cbin() bug when channel_labels are not None.

https://github.com/int-brain-lab/ibl-neuropixel/compare/1.2.0...1.2.1

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.2.0

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.1.3...1.2.0

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.1.3

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.1.2...1.1.3

- Python
Published by chris-langfield almost 2 years ago

ibl-neuropixel - 1.1.2

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.1.1...1.1.2

- Python
Published by oliche almost 2 years ago

ibl-neuropixel - 1.1.1

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.0.1...1.1.1

- Python
Published by oliche almost 2 years ago

ibl-neuropixel - 1.0.1 bugfix extract waveforms

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/1.0.0...1.0.1

- Python
Published by oliche about 2 years ago

ibl-neuropixel - 1.0.0 Spike sorting 1.6.0

What's Changed

  • Saturation by @oliche in https://github.com/int-brain-lab/ibl-neuropixel/pull/33
  • Waveform Extractions

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/0.10.3...1.0.0

- Python
Published by oliche about 2 years ago

ibl-neuropixel - 0.10.3

0.10.3 2024-04-18

  • Patch fixing memory leaks for waveform_extraction module.

- Python
Published by chris-langfield about 2 years ago

ibl-neuropixel - 0.10.2

0.10.2 2024-04-10

  • Add waveform_extraction module to ibldsp. This includes the extract_wfs_array and extract_wfs_cbin methods.
  • Add code for performing subsample shifts of waveforms.

- Python
Published by chris-langfield about 2 years ago

ibl-neuropixel - 0.10.1 spikeglx version 20230905 coordinates

Make sure the metadata reader is compatible with the new meta-data format.

- Python
Published by oliche over 2 years ago

ibl-neuropixel - 0.10.0

Support for online spikeglx Reader

- Python
Published by oliche over 2 years ago

ibl-neuropixel - 0.9.2

  • neurodsp is now ibldsp. Drop-in replacement of the package name is all that is required to update. The neurodsp name will disappear on 01-Sep-2024; until then both names will work.

- Python
Published by chris-langfield over 2 years ago

ibl-neuropixel - 0.9.1

  • neurodsp is now ibldsp. Drop-in replacement of the package name is all that is required to update. The neurodsp name will disappear on 01-Sep-2024; until then both names will work.

Full Changelog: https://github.com/int-brain-lab/ibl-neuropixel/compare/0.9.0...0.9.1

- Python
Published by chris-langfield over 2 years ago

ibl-neuropixel - 0.9.0

neurodsp.utils.sync_timestamps: uses FFT based correlation to speed up large arrays alignments waveforms: new wiggle plot for multi-trace waveforms

- Python
Published by oliche over 2 years ago

ibl-neuropixel -

- Python
Published by oliche over 2 years ago

ibl-neuropixel - 0.8.0

Spikeglx support for new geometry meta-data (2023-04)

- Python
Published by oliche almost 3 years ago

ibl-neuropixel - v0.7.0

0.7.0

0.7.0 2023-06-29

  • Add function spike_venn3 in new module neurodsp.spiketrains
  • Update iblutil dependency to 1.7.0 to use iblutil.numerical.bincount2D

0.6.2 2023-06-19

  • add option to specify meta-data file for spikeglx.Reader

0.6.1 2023-06-06

- Fix bug in ADC cycles sampling for Neuropixel 1.0 probes

0.6.0 2023-05-15

  • Add waveforms utilities for spike features computations

0.5.0

0.5.3 2023-04-24

  • Fix for cases where channel map keys are not present

0.5.2 2023-04-19

  • Geometry now supports both snsShankMap and snsGeomMap fields
  • Option to compute LFP without splitting shanks

0.5.1 2023-03-07

  • Enforce iblutil dependency

0.5.0 2023-03-06

  • KCSD option for LFP current source density
  • Cadzow for NP1: expose spatial parameters for LFP

0.4.0

0.4.1 2022-11-29

  • CAT GT command in meta file

0.4.0 2022-10-28

  • current source density simple double diff with denoising from raw LFP

0.3.0

0.3.2 2022-10-27

  • spikeglx geometry chops the ADC sample shift to the number of channels to accomodate legacy 3A probes with 276 channels
  • agc: gain refers to the inverse of applied gains for agc - done to handle dead channels in destriping ## 0.3.1
  • neurodsp.utils.rises / falls: detects rising and falling edges of oversampled analog signals

0.3.0

  • neuropixel: add functions to reconstruct original files from split NP2.4 files

minor changes

  • support for returning number of shanks from metadata

0.2.0

0.2.2

  • BUGFIX change getattr of neuropixel to allow for stared imports

0.2.1

  • BUGFIX constant SYNCPINOUT re-introduced in ibl-neuropixel

0.2.0

  • destripedecompresscbin: add a parameter to output QC in a different location to accomodate pykilosort scratch dir
  • support for NP2.4 and NP2.1 geometries on spikeGlx

minor changes

  • deprecated SITES_COORDINATES that would default on Neuropixel 1.0 early generations (3A probes with 374 channels)
  • spikeglx compress: pass dtype to mtscomp

- Python
Published by chris-langfield almost 3 years ago