geochronr

Development repository for GeoChronR

https://github.com/nickmckay/geochronr

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    Found 12 DOI reference(s) in README
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    Links to: zenodo.org
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  • Scientific vocabulary similarity
    Low similarity (18.7%) to scientific vocabulary
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Repository

Development repository for GeoChronR

Basic Info
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  • Stars: 33
  • Watchers: 19
  • Forks: 2
  • Open Issues: 10
  • Releases: 3
Created almost 11 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog License Citation

README.md

DOI:10.5194/gchron-2020-25) R License: MIT R-CMD-check <!-- badges: end -->

geoChronR

What is it?

Quantifying age uncertainties is a critical component of paleoscience (paleoclimatology, paleoecology, paleontology). geoChronR is an integrated framework that allows scientists to generate state-of-the-art age models for their records, create time-uncertain ensembles of their data, analyze those ensembles with a number of commonly-used techniques, and visualize their results in an intuitive way. The code is being developed in the open-source and community-supported R platform.

A peer-reviewed paper describing geoChronR was published in March 2021 in Geochronology, check it out here

Pre-Installation

geoChronR is a package for R, and so you'll need R to run and install it. geoChronR should work with any version newer than 3.6.0. You can download R for your operating system here.

You'll also need an interface to use R. Although many can work, I strongly recommend RStudio. You can download RStudio for your operating system here.

Once you have R and your interface up and running, you'll need to install some packages. Most of this will be handled automatically, but to get started install the remotes package:

install.packages("remotes")

Installation

Install package in R Studio:

remotes::install_github("nickmckay/geoChronR")

Load the package into the environment:

library(geoChronR)

Getting started with geoChronR

A great way to get started with geoChronR is to work through some of the tutorials avialable at the top of the geoChronR documentation page. These are also provided as "vignettes" that come installed with geoChronR, which you can access by running browseVignettes("geoChronR"). These examples run through how to create an age model ensemble, perform ensemble correlation, regression, spectral and principal components analysis, and visualize the results. They also show off some of the tools we've built for efficiently working with and visualizing LiPD datasets.

Once you're ready to start applying these techniques to your new data, you'll need one more LiPD files. Thousands of LiPD datasets are available at lipdverse.org and the World Data Service for Paleoclimatology. If you'd like to create your own dataset, the easiest way is using the lipd.net/playground. This can be a bit daunting at first, but check out the tutorial on the playground, and/or this youtube tutorial to get started.

How to Cite this Code

McKay, N. P., Emile-Geay, J., and Khider, D.: geoChronR – an R package to model, analyze, and visualize age-uncertain data, Geochronology, 3, 149–169, https://doi.org/10.5194/gchron-3-149-2021, 2021.

DOI:10.5194/gchron-3-149-2021)

Additional Resources

Github - lipdR

Github - LiPD Utilities

Linked Earth Wiki

LiPD.net

Contact

If you are having issues, please create an issue here, or if for some reason it's not appropriate for the Github issue tracker let us know at nick@nau.edu.

License

The project is licensed under the MIT License

Owner

  • Name: Nick McKay
  • Login: nickmckay
  • Kind: user
  • Location: Flagstaff, AZ
  • Company: Northern Arizona University

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.2.2
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "geoChronR" in publications use:'
type: software
license: MIT
title: 'geoChronR: Tools to Analyze and Visualize Time-Uncertain Data'
version: 1.1.6
abstract: Time uncertain chronology developement and analysis, including correlation,
  regression, spectral, and PCA for paleogeoscientific data.
authors:
- family-names: McKay
  given-names: Nicholas
  email: nick@nau.edu
  orcid: https://orcid.org/0000-0003-3598-5113
- family-names: Emile-Geay
  given-names: Julien
  orcid: https://orcid.org/0000-0001-5920-4751
- family-names: Khider
  given-names: Deborah
  orcid: https://orcid.org/0000-0001-7501-8430
preferred-citation:
  type: manual
  title: 'geoChronR: Tools to Analyze and Visualize Time-Uncertain Data'
  authors:
  - family-names: McKay
    given-names: Nicholas
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  - family-names: Emile-Geay
    given-names: Julien
    orcid: https://orcid.org/0000-0001-5920-4751
  - family-names: Khider
    given-names: Deborah
    orcid: https://orcid.org/0000-0001-7501-8430
  version: 1.1.6
  abstract: Time uncertain chronology developement and analysis, including correlation,
    regression, spectral, and PCA for paleogeoscientific data.
  repository-code: https://github.com/nickmckay/GeoChronR
  url: https://github.com/nickmckay/GeoChronR
  date-released: '2021-02-01'
  contact:
  - family-names: McKay
    given-names: Nicholas
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  license: MIT
  year: '2021'
repository-code: https://github.com/nickmckay/GeoChronR
url: https://github.com/nickmckay/GeoChronR
date-released: '2021-02-01'
contact:
- family-names: McKay
  given-names: Nicholas
  email: nick@nau.edu
  orcid: https://orcid.org/0000-0003-3598-5113
references:
- type: software
  title: Bchron
  abstract: 'Bchron: Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
    Estimation, and Non-Parametric Phase Modelling'
  notes: Imports
  authors:
  - family-names: Parnell
    given-names: Andrew
    email: Andrew.Parnell@mu.ie
  year: '2022'
  url: https://CRAN.R-project.org/package=Bchron
- type: software
  title: RColorBrewer
  abstract: 'RColorBrewer: ColorBrewer Palettes'
  notes: Imports
  authors:
  - family-names: Neuwirth
    given-names: Erich
    email: erich.neuwirth@univie.ac.at
  year: '2022'
  url: https://CRAN.R-project.org/package=RColorBrewer
- type: software
  title: arsenal
  abstract: 'arsenal: An Arsenal of ''R'' Functions for Large-Scale Statistical Summaries'
  notes: Imports
  authors:
  - family-names: Heinzen
    given-names: Ethan
    email: heinzen.ethan@mayo.edu
  - family-names: Sinnwell
    given-names: Jason
  - family-names: Atkinson
    given-names: Elizabeth
  - family-names: Gunderson
    given-names: Tina
  - family-names: Dougherty
    given-names: Gregory
  year: '2022'
  url: https://CRAN.R-project.org/package=arsenal
- type: software
  title: dplR
  abstract: 'dplR: Dendrochronology Program Library in R'
  notes: Imports
  authors:
  - family-names: Bunn
    given-names: Andy
    email: bunna@wwu.edu
  - family-names: Korpela
    given-names: Mikko
  - family-names: Biondi
    given-names: Franco
  - family-names: Campelo
    given-names: Filipe
  - family-names: Mérian
    given-names: Pierre
  - family-names: Qeadan
    given-names: Fares
  - family-names: Zang
    given-names: Christian
  year: '2022'
  url: https://CRAN.R-project.org/package=dplR
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2022'
  url: https://CRAN.R-project.org/package=dplyr
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@rstudio.com
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  year: '2022'
  url: https://CRAN.R-project.org/package=ggplot2
- type: software
  title: ggthemes
  abstract: 'ggthemes: Extra Themes, Scales and Geoms for ''ggplot2'''
  notes: Imports
  authors:
  - family-names: Arnold
    given-names: Jeffrey B.
    email: jeffrey.arnold@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=ggthemes
- type: software
  title: ggmap
  abstract: 'ggmap: Spatial Visualization with ggplot2'
  notes: Imports
  authors:
  - family-names: Kahle
    given-names: David
    email: david@kahle.io
    orcid: https://orcid.org/0000-0002-9999-1558
  - family-names: Wickham
    given-names: Hadley
    email: h.wickham@gmail.com
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Jackson
    given-names: Scott
    email: scottmmjackson@gmail.com
  year: '2022'
  url: https://github.com/dkahle/ggmap
- type: software
  title: grDevices
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2022'
  url: https://www.R-project.org/
  institution:
    name: R Foundation for Statistical Computing
- type: software
  title: grid
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2022'
  url: https://www.R-project.org/
  institution:
    name: R Foundation for Statistical Computing
- type: software
  title: lomb
  abstract: 'lomb: Lomb-Scargle Periodogram'
  notes: Imports
  authors:
  - family-names: Ruf
    given-names: Thomas
  - family-names: al.
    given-names: partially based on C original by Press et
  - family-names: Astropy.
    given-names: the Python module
  year: '2022'
  url: https://CRAN.R-project.org/package=lomb
- type: software
  title: mapproj
  abstract: 'mapproj: Map Projections'
  notes: Imports
  authors:
  - family-names: Brownrigg
    given-names: Doug McIlroy. Packaged for R by Ray
  - family-names: Minka
    given-names: Thomas P
  - family-names: Bivand.
    given-names: transition to Plan 9 codebase by Roger
  year: '2022'
  url: https://CRAN.R-project.org/package=mapproj
- type: software
  title: maps
  abstract: 'maps: Draw Geographical Maps'
  notes: Imports
  authors:
  - family-names: Becker
    given-names: Original S code by Richard A.
  - family-names: Minka
    given-names: Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas
      P
  - family-names: Deckmyn.
    given-names: Alex
  year: '2022'
  url: https://CRAN.R-project.org/package=maps
- type: software
  title: rbacon
  abstract: 'rbacon: Age-Depth Modelling using Bayesian Statistics'
  notes: Imports
  authors:
  - family-names: Blaauw
    given-names: Maarten
    email: maarten.blaauw@qub.ac.uk
    orcid: https://orcid.org/0000-0002-5680-1515
  - family-names: Christen
    given-names: J. Andres
    email: jac@cimat.mx
    orcid: https://orcid.org/0000-0002-5795-4345
  - family-names: Aquino Lopez
    given-names: Marco A.
    email: aquino@cimat.mx
  year: '2022'
  url: https://CRAN.R-project.org/package=rbacon
- type: software
  title: reshape2
  abstract: 'reshape2: Flexibly Reshape Data: A Reboot of the Reshape Package'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: h.wickham@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=reshape2
- type: software
  title: scales
  abstract: 'scales: Scale Functions for Visualization'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Seidel
    given-names: Dana
  year: '2022'
  url: https://CRAN.R-project.org/package=scales
- type: software
  title: tibble
  abstract: 'tibble: Simple Data Frames'
  notes: Imports
  authors:
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=tibble
- type: software
  title: ggridges
  abstract: 'ggridges: Ridgeline Plots in ''ggplot2'''
  notes: Imports
  authors:
  - family-names: Wilke
    given-names: Claus O.
    email: wilke@austin.utexas.edu
    orcid: https://orcid.org/0000-0002-7470-9261
  year: '2022'
  url: https://CRAN.R-project.org/package=ggridges
- type: software
  title: gridExtra
  abstract: 'gridExtra: Miscellaneous Functions for "Grid" Graphics'
  notes: Imports
  authors:
  - family-names: Auguie
    given-names: Baptiste
    email: baptiste.auguie@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=gridExtra
- type: software
  title: purrr
  abstract: 'purrr: Functional Programming Tools'
  notes: Imports
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@rstudio.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=purrr
- type: software
  title: matrixStats
  abstract: 'matrixStats: Functions that Apply to Rows and Columns of Matrices (and
    to Vectors)'
  notes: Imports
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: henrikb@braju.com
  year: '2022'
  url: https://CRAN.R-project.org/package=matrixStats
- type: software
  title: pcaMethods
  abstract: 'pcaMethods: A collection of PCA methods'
  notes: Imports
  authors:
  - family-names: Stacklies
    given-names: Wolfram
  - family-names: Redestig
    given-names: Henning
  - family-names: Wright
    given-names: Kevin
  year: '2022'
  url: https://github.com/hredestig/pcamethods
- type: software
  title: pbapply
  abstract: 'pbapply: Adding Progress Bar to ''*apply'' Functions'
  notes: Imports
  authors:
  - family-names: Solymos
    given-names: Peter
  - family-names: Zawadzki
    given-names: Zygmunt
  year: '2022'
  url: https://CRAN.R-project.org/package=pbapply
- type: software
  title: oxcAAR
  abstract: 'oxcAAR: Interface to ''OxCal'' Radiocarbon Calibration'
  notes: Imports
  authors:
  - family-names: Martin
    given-names: Hinz
    email: martin.hinz@iaw.unibe.ch
  - family-names: Schmid
    given-names: Clemens
    email: clemens@nevrome.de
  - family-names: Knitter
    given-names: Daniel
    email: knitter@geographie.uni-kiel.de
  - family-names: Tietze
    given-names: Carolin
    email: Carolin Tietze <ctietze1991@gmail.com>
  year: '2022'
  url: https://CRAN.R-project.org/package=oxcAAR
- type: software
  title: Hmisc
  abstract: 'Hmisc: Harrell Miscellaneous'
  notes: Imports
  authors:
  - family-names: Harrell Jr
    given-names: Frank E
    email: fh@fharrell.com
    orcid: https://orcid.org/0000-0002-8271-5493
  year: '2022'
  url: https://CRAN.R-project.org/package=Hmisc
- type: software
  title: glue
  abstract: 'glue: Interpreted String Literals'
  notes: Imports
  authors:
  - family-names: Hester
    given-names: Jim
    orcid: https://orcid.org/0000-0002-2739-7082
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2022'
  url: https://CRAN.R-project.org/package=glue
- type: software
  title: BiocManager
  abstract: 'BiocManager: Access the Bioconductor Project Package Repository'
  notes: Imports
  authors:
  - family-names: Morgan
    given-names: Martin
    email: martin.morgan@roswellpark.org
    orcid: https://orcid.org/0000-0002-5874-8148
  year: '2022'
  url: https://CRAN.R-project.org/package=BiocManager
- type: software
  title: rEDM
  abstract: 'rEDM: Empirical Dynamic Modeling (''EDM'')'
  notes: Imports
  authors:
  - family-names: Park
    given-names: Joseph
    email: JosephPark@IEEE.org
    orcid: https://orcid.org/0000-0001-5411-1409
  - family-names: Smith
    given-names: Cameron
    email: cos008@ucsd.edu
    orcid: https://orcid.org/0000-0003-0020-5607
  - family-names: Sugihara
    given-names: George
    orcid: https://orcid.org/0000-0002-2863-6946
  - family-names: Deyle
    given-names: Ethan
    orcid: https://orcid.org/0000-0001-8704-8434
  year: '2022'
  url: https://CRAN.R-project.org/package=rEDM
- type: software
  title: inline
  abstract: 'inline: Functions to Inline C, C++, Fortran Function Calls from R'
  notes: Imports
  authors:
  - family-names: Sklyar
    given-names: Oleg
  - family-names: Murdoch
    given-names: Duncan
  - family-names: Smith
    given-names: Mike
  - family-names: Eddelbuettel
    given-names: Dirk
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    given-names: Romain
  - family-names: Soetaert
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  - family-names: Ranke
    given-names: Johannes
  year: '2022'
  url: https://CRAN.R-project.org/package=inline
- type: software
  title: bindrcpp
  abstract: 'bindrcpp: An ''Rcpp'' Interface to Active Bindings'
  notes: Imports
  authors:
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2022'
  url: https://CRAN.R-project.org/package=bindrcpp
- type: software
  title: geosphere
  abstract: 'geosphere: Spherical Trigonometry'
  notes: Imports
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: r.hijmans@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=geosphere
- type: software
  title: proto
  abstract: 'proto: Prototype Object-Based Programming'
  notes: Imports
  authors:
  - family-names: Grothendieck
    given-names: Gabor
    email: ggrothendieck@gmail.com
  - family-names: Kates
    given-names: Louis
  - family-names: Petzoldt
    given-names: Thomas
  year: '2022'
  url: https://CRAN.R-project.org/package=proto
- type: software
  title: crayon
  abstract: 'crayon: Colored Terminal Output'
  notes: Imports
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2022'
  url: https://CRAN.R-project.org/package=crayon
- type: software
  title: tidyr
  abstract: 'tidyr: Tidy Messy Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Girlich
    given-names: Maximilian
  year: '2022'
  url: https://CRAN.R-project.org/package=tidyr
- type: software
  title: magrittr
  abstract: 'magrittr: A Forward-Pipe Operator for R'
  notes: Imports
  authors:
  - family-names: Bache
    given-names: Stefan Milton
    email: stefan@stefanbache.dk
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=magrittr
- type: software
  title: astrochron
  abstract: 'astrochron: A Computational Tool for Astrochronology'
  notes: Imports
  authors:
  - family-names: Meyers
    given-names: Stephen
  - family-names: Malinverno
    given-names: Alberto
  - family-names: Hinnov
    given-names: Linda
  - family-names: Zeeden
    given-names: Christian
  - family-names: Liu
    given-names: Huaran
  - family-names: Moron
    given-names: Vincent
  year: '2022'
  url: https://CRAN.R-project.org/package=astrochron
- type: software
  title: spatstat.core
  abstract: 'spatstat.core: Core Functionality of the ''spatstat'' Family'
  notes: Imports
  authors:
  - family-names: Baddeley
    given-names: Adrian
    email: Adrian.Baddeley@curtin.edu.au
  - family-names: Turner
    given-names: Rolf
    email: r.turner@auckland.ac.nz
  - family-names: Rubak
    given-names: Ege
    email: rubak@math.aau.dk
  year: '2022'
  url: https://CRAN.R-project.org/package=spatstat.core
- type: software
  title: MASS
  abstract: 'MASS: Support Functions and Datasets for Venables and Ripley''s MASS'
  notes: Imports
  authors:
  - family-names: Ripley
    given-names: Brian
    email: ripley@stats.ox.ac.uk
  year: '2022'
  url: https://CRAN.R-project.org/package=MASS
- type: software
  title: plyr
  abstract: 'plyr: Tools for Splitting, Applying and Combining Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=plyr
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=stringr
- type: software
  title: readr
  abstract: 'readr: Read Rectangular Text Data'
  notes: Imports
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Hester
    given-names: Jim
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2022'
  url: https://CRAN.R-project.org/package=readr
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2022'
  url: https://CRAN.R-project.org/package=knitr
- type: software
  title: lipdR
  abstract: 'lipdR: LiPD utilities for R'
  notes: Suggests
  authors:
  - family-names: McKay
    given-names: Nick
    email: nick@nau.edu
    orcid: https://orcid.org/0000-0003-3598-5113
  - family-names: Heiser
    given-names: Chris
    email: heiser@nau.edu
  year: '2022'
- type: software
  title: neotoma2
  abstract: 'neotoma2: Working with the Neotoma Paleoecology Database'
  notes: Suggests
  authors:
  - family-names: Socorro
    given-names: Dominguez Vidana
    email: sedv8808@gmail.com
    orcid: https://orcid.org/0000-0002-7926-4935
  - family-names: Goring
    given-names: Simon
    email: goring@wisc.edu
    orcid: https://orcid.org/0000-0002-2700-4605
  year: '2022'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@rstudio.com
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@rstudio.com
  - family-names: Luraschi
    given-names: Javier
    email: javier@rstudio.com
  - family-names: Ushey
    given-names: Kevin
    email: kevin@rstudio.com
  - family-names: Atkins
    given-names: Aron
    email: aron@rstudio.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Cheng
    given-names: Joe
    email: joe@rstudio.com
  - family-names: Chang
    given-names: Winston
    email: winston@rstudio.com
  - family-names: Iannone
    given-names: Richard
    email: rich@rstudio.com
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2022'
  url: https://CRAN.R-project.org/package=rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2022'
  url: https://CRAN.R-project.org/package=testthat

GitHub Events

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Last Year
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Issues and Pull Requests

Last synced: 11 months ago

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Dependencies

DESCRIPTION cran
  • Bchron * imports
  • BiocManager * imports
  • Hmisc * imports
  • MASS * imports
  • RColorBrewer * imports
  • arsenal * imports
  • astrochron * imports
  • bindrcpp * imports
  • crayon * imports
  • dplR * imports
  • dplyr * imports
  • geosphere * imports
  • ggmap * imports
  • ggplot2 * imports
  • ggridges * imports
  • ggthemes * imports
  • glue * imports
  • grDevices * imports
  • grid * imports
  • gridExtra * imports
  • inline * imports
  • lipdR * imports
  • lomb * imports
  • magrittr * imports
  • mapproj * imports
  • maps * imports
  • matrixStats * imports
  • oxcAAR * imports
  • pbapply * imports
  • pcaMethods * imports
  • plyr * imports
  • proto * imports
  • purrr * imports
  • rEDM * imports
  • rbacon * imports
  • readr * imports
  • reshape2 * imports
  • scales * imports
  • spatstat.core * imports
  • stringr * imports
  • tibble * imports
  • tidyr * imports
  • knitr * suggests
  • neotoma2 * suggests
  • nuspectral * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v2 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action 4.1.4 composite
  • actions/checkout v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite