Recent Releases of crocodeel
crocodeel - CroCoDeEL v1.0.8
Replace deprecated argparse.FileType to support Python >= 3.14
- Python
Published by fplazaonate 11 months ago
crocodeel - CroCoDeEL v1.0.7
Add CLI parameters to customize contamination reporting cutoffs Add a new subcommand (train_model) to train a custom Random Forest classifier Slight performance improvements Improve documentation and logging messages
- Python
Published by fplazaonate about 1 year ago
crocodeel - v1.0.6
Add a feature to filter low-abundance species and enhance CroCoDeEL's sensitivity with taxonomic profilers other than Meteor. Fix a bug when merging two abundance tables containing a different number of species. #2 Improve logging messages and update the documentation.
- Python
Published by fplazaonate over 1 year ago
crocodeel - CroCoDeEL 1.0.5
Merge commands 'searchconta' and 'searchcontamulti' Add option for a second species abundance table in 'searchconta' 'plotconta' and 'easywf' commands
- Python
Published by fplazaonate about 2 years ago
crocodeel - CroCoDeEL 1.0.4
Add command (searchcontadistrib) to be used in workflows to distribute computational load across multiple nodes Fix matplotlib warning when generating a pdf with many pages Improve software architecture
- Python
Published by fplazaonate about 2 years ago
crocodeel - CroCoDeEL 1.0.3
Improve logging messages Improve traceability by adding a comment line in output file
- Python
Published by fplazaonate about 2 years ago
crocodeel - CroCoDeEL 1.0.2
Improve logging messages Use importlib.resources to load models and test data Update package requirements for submission to bioconda
- Python
Published by fplazaonate about 2 years ago
crocodeel - CroCoDeEL 1.0.1
Update documentation Remove old code
- Python
Published by fplazaonate about 2 years ago
crocodeel - CroCoDeEL 1.0.0
First release of CroCoDeEL ready to be published on PyPI
- Python
Published by fplazaonate about 2 years ago