arbor

The Arbor multi-compartment neural network simulation library.

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
4 of 35 committers (11.4%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (8.8%) to scientific vocabulary

Keywords

cuda gpu hip hpc modern-cpp mpi neuroscience

Keywords from Contributors

cpp17 distributed parallelism global-sensitivity-analysis morris salib sensitivity-analysis sensitivity-analysis-library sobol uncertainty

Last synced: 6 months ago · JSON representation ·

Repository

The Arbor multi-compartment neural network simulation library.

Basic Info

Host: GitHub
Owner: arbor-sim
License: bsd-3-clause
Language: C++
Default Branch: master
Homepage: https://arbor-sim.org
Size: 21.3 MB

Statistics

Stars: 119
Watchers: 21
Forks: 64
Open Issues: 69
Releases: 16

Topics

cuda gpu hip hpc modern-cpp mpi neuroscience

Created over 9 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog Contributing License Code of conduct Citation

Arbor Library

Arbor is a library for implementing performance portable network simulations of multi-compartment neuron models.

An installation guide and library documentation are available online at docs.arbor-sim.org.

Submit a ticket or join Gitter or Matrix if you have any questions or need help.

Citing Arbor

The Arbor introductory paper and entry on Zenodo can be cited, see CITATION.bib. Please refer to our documentation for more information.

Owner

Name: Arbor Neural Network Simulation Library
Login: arbor-sim
Kind: organization
Email: contact@arbor-sim.org

Website: arbor-sim.org
Repositories: 11
Profile: https://github.com/arbor-sim

Arbor – a morphologically-detailed neural network simulation library for contemporary high-performance computing architectures

Citation (CITATION.bib)

@INPROCEEDINGS{
    paper:arbor2019,
    author={N. {Abi Akar} and B. {Cumming} and V. {Karakasis} and A. {Küsters} and W. {Klijn} and A. {Peyser} and S. {Yates}},
    booktitle={2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP)},
    title={{Arbor --- A Morphologically-Detailed Neural Network Simulation Library for Contemporary High-Performance Computing Architectures}},
    year={2019}, month={feb}, volume={}, number={},
    pages={274--282},
    doi={10.1109/EMPDP.2019.8671560},
    ISSN={2377-5750}}

@software{arbor_0_11_0,
  author       = {Cumming, Benjamin and
                  Yates, Stuart and
                  Hater, Thorsten and
                  Lu, Han and
                  Huisman, Brent and
                  Klijn, Wouter and
                  Bösch, Fabian and
                  Ibáñez Bolado, Mario
                  Drescher, Lukas and
                  Frasch, Simon and
                  de Schepper, Robin and
                  Luboeinski, Jannik},
  title        = {Arbor v0.11.0},
  month        = apr,
  year         = 2025,
  publisher    = {Zenodo},
  version      = {v0.11.0},
  doi          = {10.5281/zenodo.15277617},
  url          = {https://doi.org/10.5281/zenodo.15277617}
}

@software{nora_abi_akar_2023_8233847,
  author       = {Nora Abi Akar and
                  John Biddiscombe and
                  Benjamin Cumming and
                  Marko Kabic and
                  Vasileios Karakasis and
                  Wouter Klijn and
                  Anne Küsters and
                  Alexander Peyser and
                  Stuart Yates and
                  Thorsten Hater and
                  Brent Huisman and
                  Espen Hagen and
                  Robin De Schepper and
                  Charl Linssen and
                  Harmen Stoppels and
                  Sebastian Schmitt and
                  Felix Huber and
                  Max Engelen and
                  Fabian Bösch and
                  Jannik Luboeinski and
                  Simon Frasch and
                  Lukas Drescher and
                  Lennart Landsmeer},
  title        = {Arbor Library v0.9.0},
  month        = nov,
  year         = 2023,
  publisher    = {Zenodo},
  version      = {v0.9.0},
  doi          = {10.5281/zenodo.8233847},
  url          = {https://doi.org/10.5281/zenodo.8233847}
}

GitHub Events

Total

Create event: 8
Issues event: 32
Watch event: 11
Delete event: 1
Member event: 1
Issue comment event: 69
Push event: 37
Pull request review comment event: 64
Pull request event: 85
Pull request review event: 126
Fork event: 5

Last Year

Create event: 8
Issues event: 32
Watch event: 11
Delete event: 1
Member event: 1
Issue comment event: 69
Push event: 37
Pull request review comment event: 64
Pull request event: 85
Pull request review event: 126
Fork event: 5

Committers

Last synced: 9 months ago

All Time

Total Commits: 1,668
Total Committers: 35
Avg Commits per committer: 47.657
Development Distribution Score (DDS): 0.776

Past Year

Commits: 163
Committers: 6
Avg Commits per committer: 27.167
Development Distribution Score (DDS): 0.393

Top Committers

Name	Email	Commits
Ben Cumming	b**g@c**h	374
Thorsten Hater	2****r	243
Sam Yates	h**t@g**m	236
Nora Abi Akar	n**r@g**m	165
Brent Huisman	b****n	141
Sam Yates	y**s@c**h	104
Han Lu	1****4	99
boeschf	4****f	47
Vasileios Karakasis	k**s@c**h	44
Sebastian Schmitt	s**t@k**e	43
w.klijn	n**e@g**m	36
Robin De Schepper	r**3@g**m	25
akuesters	4****s	24
w.klijn	w**n@f**e	17
Vasileios Karakasis	v**k@g**m	15
Alexander Peyser	a****r	10
Harmen Stoppels	h**s@g**m	9
Wouter Klijn	w**n@g**m	7
Espen Hagen	2****n	4
Lennart Landsmeer	l**t@l**l	3
Simon Frasch	s**h@c**h	3
lukasgd	3****d	3
Jannik Luboeinski	3****o	2
John Biddiscombe	b**o@c**h	2
Lea Kanzleiter	8****l	2
Ben Beasley	c**e@m**t	1
Eric Müller	m**a@g**m	1
Felix Huber	q****s	1
kabicm	m**c@c**h	1
Hannes Vogt	h**s@h**e	1
and 5 more...

Committer Domains (Top 20 + Academic)

cscs.ch: 6 fz-juelich.de: 2 student.ethz.ch: 1 iki.fi: 1 bsc.es: 1 havogt.de: 1 musicinmybrain.net: 1 landsmeer.email: 1 kip.uni-heidelberg.de: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 150
Total pull requests: 520
Average time to close issues: over 1 year
Average time to close pull requests: about 1 month
Total issue authors: 21
Total pull request authors: 15
Average comments per issue: 2.66
Average comments per pull request: 0.96
Merged pull requests: 415
Bot issues: 33
Bot pull requests: 0

Past Year

Issues: 12
Pull requests: 109
Average time to close issues: about 1 month
Average time to close pull requests: 22 days
Issue authors: 5
Pull request authors: 5
Average comments per issue: 0.0
Average comments per pull request: 0.83
Merged pull requests: 74
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

github-actions[bot] (33)
thorstenhater (25)
brenthuisman (19)
Helveg (11)
yurivict (10)
schmitts (10)
jlubo (9)
halfflat (7)
llandsmeer (5)
bcumming (4)
ErbB4 (3)
noraabiakar (3)
akuesters (2)
utkuoguzman (2)
max9901 (1)

Pull Request Authors

thorstenhater (235)
ErbB4 (186)
boeschf (41)
brenthuisman (29)
Helveg (6)
llandsmeer (4)
bcumming (3)
AdhocMan (3)
ibanezbm (3)
jlubo (3)
halfflat (2)
jeffreytepper (2)
penguinpee (1)
lukasgd (1)
musicinmybrain (1)

Top Labels

Issue Labels

enhancement (46) bug (43) automated issue (24) help wanted (20) Feature Request (19) AEP (14) neuroscience (13) python (10) code quality (10) dependency update (9) interface (8) documentation (6) Project: Arborio (5) optimization (4) packaging (3) co-sim (3) numerics (2) Project: Fippa (2) cmake (2) ebrains (2) hpc (2) gpu (2) clarification needed (2) test (2) CI/CD (1) good 1st issue (1) arbor IO (1) modcc (1) nmodl (1) lfpy (1)

Pull Request Labels

bug (8) broke the build (6) gpu (2) enhancement (1) arbor IO (1) code quality (1) modcc (1)

Packages

Total packages: 2
Total downloads:
- pypi 4,264 last-month

Total dependent packages: 8
(may contain duplicates)
Total dependent repositories: 3
(may contain duplicates)
Total versions: 14
Total maintainers: 2

pypi.org: arbor-bcumming

High performance simulation of networks of multicompartment neurons.

Homepage: https://github.com/arbor-sim/arbor
Documentation: https://arbor-bcumming.readthedocs.io/
License: BSD License
Latest release: 0.5
published about 5 years ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 6 Last month

Rankings

Forks count: 4.4%

Average: 5.0%

Stargazers count: 5.5%

Maintainers (1)

bcumming

Last synced: about 1 year ago

pypi.org: arbor

High performance simulation of networks of multicompartment neurons.

Documentation: https://arbor.readthedocs.io/
License: bsd-3-clause
Latest release: 0.11.0
published 10 months ago

Versions: 12
Dependent Packages: 8
Dependent Repositories: 3
Downloads: 4,258 Last month

Rankings

Dependent packages count: 1.4%

Forks count: 5.5%

Average: 6.4%

Stargazers count: 7.2%

Downloads: 8.6%

Dependent repos count: 9.0%

Maintainers (2)

bcumming t.hater

Last synced: 7 months ago

Dependencies

doc/requirements.txt pypi

docutils >=0.17
sphinx >=2.4.0
svgwrite *

python/example/example_requirements.txt pypi

LFPykit >=0.3
pandas *
seaborn *

.github/workflows/benchmarks.yml actions

actions/checkout v3 composite
hendrikmuhs/ccache-action v1.2 composite
jwlawson/actions-setup-cmake v1.13 composite

.github/workflows/ebrains.yml actions

wei/git-sync v3 composite

.github/workflows/lint.yml actions

actions/checkout v3 composite
actions/setup-python v4 composite
psf/black stable composite

.github/workflows/sanitize.yml actions

actions/checkout v3 composite
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jwlawson/actions-setup-cmake v1.13 composite

pyproject.toml pypi

numpy *

doc/dependencies.csv shard

.github/workflows/build-pip-wheels.yml actions

actions/checkout v3 composite
actions/download-artifact v3 composite
actions/upload-artifact v3 composite
ncipollo/release-action v1 composite

.github/workflows/test-docs.yaml actions

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.github/workflows/test-matrix.yml actions

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jwlawson/actions-setup-cmake v1.13 composite

.github/workflows/test-pip.yml actions

actions/checkout v3 composite
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.github/workflows/test-spack.yml actions

actions/cache v3 composite
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actions/upload-artifact v3 composite

ci/cscs/daint_gpu/Dockerfile docker

$BASE_IMG latest build

ci/cscs/daint_mc/Dockerfile docker

$BASE_IMG latest build

ci/cscs/hohgant_cpu/Dockerfile docker

$BASE_IMG latest build

arbor

Science Score: 54.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

Arbor Library

Citing Arbor

Owner

Citation (CITATION.bib)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: arbor-bcumming

Rankings

Maintainers (1)

pypi.org: arbor

Rankings

Maintainers (2)

Dependencies