core

parallel finite element unstructured meshes

Science Score: 75.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 4 DOI reference(s) in README
○
Academic publication links
✓
Committers with academic emails
53 of 89 committers (59.6%) from academic institutions
✓
Institutional organization owner
Organization scorec has institutional domain (www.scorec.rpi.edu)
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (16.5%) to scientific vocabulary

Keywords

adaptive bigger-meshes c c-plus-plus cmake finite-elements hpc meshes mpi parallel parallel-computing unstructured-meshes

Last synced: 4 months ago · JSON representation ·

Repository

parallel finite element unstructured meshes

Basic Info

Host: GitHub
Owner: SCOREC
License: other
Language: C++
Default Branch: master
Homepage: http://scorec.github.io/core/
Size: 11.3 MB

Statistics

Stars: 190
Watchers: 46
Forks: 65
Open Issues: 116
Releases: 0

Topics

adaptive bigger-meshes c c-plus-plus cmake finite-elements hpc meshes mpi parallel parallel-computing unstructured-meshes

Created over 11 years ago · Last pushed 4 months ago

Metadata Files

Readme License Citation

SCOREC Core

The SCOREC Core is a set of C/C++ libraries for unstructured mesh simulations on supercomputers.

For more information, start at our wiki page

What is in this repository?

PUMI: parallel unstructured mesh infrastructure API User Guide
PCU: Communication and file IO built on MPI
APF: Abstract definition of meshes, fields, and related operations
GMI: Common interface for geometric modeling kernels
MDS: Compact but flexible array-based mesh data structure
PARMA: Scalable partitioning and load balancing procedures
SPR: Superconvergent Patch Recovery error estimator
MA: Anisotropic mixed mesh adaptation and solution transfer
SAM: Sizing anisotropic meshes
STK: Conversion from APF meshes to Sandia's STK meshes
ZOLTAN: Interface to run Sandia's Zoltan code on APF meshes
PHASTA: Tools and file formats related to the PHASTA fluid solver
MTH: Math containers and routines
CRV: Support for curved meshes with Bezier Shapes
PYCORE: Python Wrappers (see python_wrappers/README.md for build instructions)
REE: Residual based implicit error estimator

How do I get set up?

Dependencies: CMake for compiling and MPI for running
Configuration: Typical CMake configure and build. The example_config.sh shows common options to select, use a front-end like ccmake to see a full list of options
Tests: the test/ subdirectory has tests and standalone tools that can be compiled by explicitly listing them as targets to make.
Users: make install places libraries and headers in a specified prefix, application code can use these in their own compilation process. We also install pkg-config files for all libraries.

Contribution guidelines

Don't break the build
See the STYLE file
If in doubt, make a branch
Run the ctest suite
Don't try to force push to master or develop; it is disabled

Who do I talk to?

If you have a usage question or have found a bug please post an issue.
Otherwise, email scorec-pumi@lists.rpi.edu.

Citing PUMI

If you use these tools, please cite the following paper:

Daniel A. Ibanez, E. Seegyoung Seol, Cameron W. Smith, and Mark S. Shephard. 2016. PUMI: Parallel Unstructured Mesh Infrastructure. ACM Trans. Math. Softw. 42, 3, Article 17 (May 2016), 28 pages. DOI: https://doi.org/10.1145/2814935

We would be happy to provide feedback on journal submissions using PUMI prior to publication.

Owner

Name: RPI SCOREC
Login: SCOREC
Kind: organization

Website: http://www.scorec.rpi.edu/
Repositories: 53
Profile: https://github.com/SCOREC

Scientific Computation Research Center

Citation (CITATION.cff)

cff-version: 1.1.0
title: "PUMI"
message: "If you use this software, please cite it as below."
authors:
  - family-names: "Ibanez"
    given-names: "Daniel A."
  - family-names: "Smith"
    given-names: "Cameron W."
    orcid: "https://orcid.org/0000-0001-9258-5226"  
  - family-names: "Granzow"
    given-names: "Brian"
  - family-names: "Zaide"
    given-names: "Daniel"
  - family-names: "Hakimi"
    given-names: "Morteza"
  - family-names: "Seol"
    given-names: "E. Seegyoung"
date-released: 2021-06-25
version: 2.2.6
keywords:
  - "unstructured meshes"
  - "parallel"
  - "mesh adaptation"
  - "load balancing"
  - "C++"
  - "finite elements"
references:
  - type: article
    authors:
      - family-names: "Ibanez"
        given-names: "Daniel A."
      - family-names: "Seol"
        given-names: "E. Seegyoung"
      - family-names: "Smith"
        given-names: "Cameron W."
        orcid: "https://orcid.org/0000-0001-9258-5226"  
      - family-names: "Shephard"
        given-names: "Mark S."
    title: "PUMI: Parallel Unstructured Mesh Infrastructure"
    doi: "10.1145/2814935"
    month: 6
    year: 2016
    volume: 42
    issue: "3"
    journal: "ACM Trans. Math. Softw"

GitHub Events

Total

Fork event: 3
Create event: 37
Commit comment event: 2
Issues event: 34
Watch event: 8
Delete event: 25
Member event: 4
Issue comment event: 209
Push event: 318
Gollum event: 6
Pull request review comment event: 123
Pull request event: 60
Pull request review event: 122

Last Year

Fork event: 3
Create event: 37
Commit comment event: 2
Issues event: 34
Watch event: 8
Delete event: 25
Member event: 4
Issue comment event: 209
Push event: 318
Gollum event: 6
Pull request review comment event: 123
Pull request event: 60
Pull request review event: 122

Committers

Last synced: almost 3 years ago

All Time

Total Commits: 4,816
Total Committers: 89
Avg Commits per committer: 54.112
Development Distribution Score (DDS): 0.765

Top Committers

Name	Email	Commits
Dan Ibanez	d**z@g**m	1,132
Cameron Smith	s**1@r**u	959
Dan Ibanez	i**d@r**u	545
Brian Granzow	b**w@g**m	372
Morteza H. Siboni	h**4@g**m	309
zaidedan	d**e@g**m	302
Fan Yang	y**4@r**u	257
E. Seegyoung Seol	s**s@r**u	111
Kenneth E. Jansen	K**n@c**u	101
a-jp	a**r@g**m	74
Samiullah Malik	m**2@r**u	66
Gerrett Diamond	d**g@r**u	54
Fan	F**n@F**m	52
paulrevere4	r**v@g**m	41
William Tobin	t**2@r**u	36
Dan Ibanez	d**e@s**v	34
Cameron Smith	c**h@u**m	32
Jacob Merson	m**j@r**u	20
Jared Crean	j**1@g**m	19
Michel Rasquin	m**n@c**u	18
Ajinkya Dahale	d**a@r**u	17
Chao Liu	l**6@g**m	17
Samiullah Malik	m**2@p**u	16
Ehsan Shams	s**e@r**u	16
Sebastian Rettenberger	r**s@i**e	14
Thenerdstation	k**8@g**m	13
Gerrett Diamond	d**g@p**u	13
Morteza H. Siboni	h**2@r**u	13
Alessandro Galli	a**3@g**m	12
Avinash	m**n@g**m	11
and 59 more...

Committer Domains (Top 20 + Academic)

rpi.edu: 14 sandia.gov: 5 colorado.edu: 4 portal2.scorec.rpi.edu: 3 in.tum.de: 2 diplomacy.scorec.rpi.edu: 2 clue.scorec.rpi.edu: 2 mastermind.scorec.rpi.edu: 2 othello.scorec.rpi.edu: 2 avatar.scorec.rpi.edu: 2 geophysik.uni-muenchen.de: 1 catan.scorec.rpi.edu: 1 romulus.scorec.rpi.edu: 1 fans-air.nycap.rr.com: 1 orchid-124.dynamic2.rpi.edu: 1 traverse.princeton.edu: 1 cii-wl-323.dynamic.rpi.edu: 1 simmetrix.com: 1 monopoly.scorec.rpi.edu: 1 rpi.com: 1 login1.ascent.olcf.ornl.gov: 1 oregonstate.edu: 1 viz001.phasta.colorado.edu: 1 orchid-211.dynamic2.rpi.edu: 1 cii-wl-82.dynamic.rpi.edu: 1 cii-wl-314.dynamic.rpi.edu: 1 cii-wl-188.dynamic.rpi.edu: 1 alcf.anl.gov: 1 rpi.edu]: 1 sage-lab-lower-317.dynamic2.rpi.edu: 1 cii-wl-389.dynamic.rpi.edu: 1 cii-wl-249.dynamic.rpi.edu: 1 cii-wl-253.dynamic.rpi.edu: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 13
Total pull requests: 24
Average time to close issues: 15 days
Average time to close pull requests: about 1 month
Total issue authors: 4
Total pull request authors: 4
Average comments per issue: 2.38
Average comments per pull request: 3.67
Merged pull requests: 13
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 13
Pull requests: 23
Average time to close issues: 15 days
Average time to close pull requests: 21 days
Issue authors: 4
Pull request authors: 4
Average comments per issue: 2.38
Average comments per pull request: 1.43
Merged pull requests: 12
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

cwsmith (16)
bobpaw (8)
jacobmerson (2)
Thomas-Ulrich (2)
yurivict (2)
Sichao25 (2)
jrwrigh (1)
thezw27 (1)

Pull Request Authors

bobpaw (31)
cwsmith (13)
jacobmerson (5)
Angelyr (5)
Sichao25 (4)
joshia5 (3)
jrwrigh (2)
flagdanger (2)

Top Labels

Issue Labels

bug (9) simmetrix (5) v2.2.9 (4) tracking version features (3) help wanted (3) building (3) CI (3) cgns (3) adaptation (2) capstone (2) mesh adapt (2) mesh file formats (1) python (1) gmsh (1) partitioning (1) parasolid (1) spack (1) phasta (1) memory leak (1)

Pull Request Labels

cmake (2) simmetrix (2) v2.2.9 (2) enhancement (1) pcu (1) documentation (1) rhel8/9 (1) CI (1) bug (1) geometric model (1)

Dependencies

.github/workflows/cmake.yml actions

actions/checkout v2 composite

core

Science Score: 75.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

SCOREC Core

What is in this repository?

How do I get set up?

Contribution guidelines

Who do I talk to?

Citing PUMI

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies