nextgenpb

https://github.com/vdiflorio/nextgenpb

Science Score: 44.0%

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Scientific vocabulary similarity
Low similarity (2.4%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Basic Info

Host: GitHub
Owner: vdiflorio
License: gpl-3.0
Language: C++
Default Branch: main
Size: 178 MB

Statistics

Stars: 0
Watchers: 4
Forks: 2
Open Issues: 0
Releases: 0

Created about 2 years ago · Last pushed 6 months ago

Metadata Files

Readme License Citation

README.md

NextGenPB

This software is distributed under the terms the terms of the GNU/GPL licence v3

Overview

NextGenPB is a linearized Poisson–Boltzmann solver based on an octree mesh.

It solves the linearized Poisson–Boltzmann equation (PBE):

$$ -\mathrm{div} \left( \varepsilon0 \varepsilonr \nabla \varphi \right) + \kappa^2 \varphi = \rho^f $$

on a rectangular domain.

All information about installation and usage can be found in the NextGenPB Tutorial and Guide

Owner

Name: Vincenzo Di Florio
Login: vdiflorio
Kind: user
Location: Genova
Company: @concept-lab

Repositories: 1
Profile: https://github.com/vdiflorio

Citation (CITATION)

To cite NextGenPB in publications use:

  Di Florio, Vincenzo, Patrizio Ansalone, Sergii V. Siryk, Sergio Decherchi, Carlo de Falco, and Walter Rocchia. 2025. “NextGenPB: An Analytically-Enabled Super Resolution and Local (De)Refinement Poisson-Boltzmann Equation Solver.” arXiv. https://doi.org/10.48550/arXiv.2502.09323.

A BibTeX entry for LaTeX users is:

  @article{DiFlorio2025NextGenPB,
    author    = {Di Florio, Vincenzo and Ansalone, Patrizio and Siryk, Sergii V. and Decherchi, Sergio and de Falco, Carlo and Rocchia, Walter},
    title     = {{NextGenPB}: An Analytically-Enabled Super Resolution and Local (De)Refinement {Poisson-Boltzmann Equation} Solver},
    journal   = {arXiv},
    year      = {2025},
    volume    = {},
    number    = {},
    pages     = {},
    eprint    = {2502.09323},
    archivePrefix = {arXiv},
    primaryClass = {physics.comp-ph},
    doi       = {10.48550/arXiv.2502.09323},
    url       = {https://arxiv.org/abs/2502.09323},
  }

We have invested a lot of time and effort in creating NextGenPB, please
cite it when using it.

GitHub Events

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Delete event: 3
Push event: 58
Pull request event: 5
Create event: 4

Last Year

Delete event: 3
Push event: 58
Pull request event: 5
Create event: 4

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