fishsense-lite - v1.1.2

v1.1.2 (2025-06-12)

Bug Fixes

• Use the correct cuda docker tag (fc94244)

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Detailed Changes: v1.1.1...v1.1.2

- Jupyter Notebook
Published by ucsd-e4e-role 9 months ago

fishsense-lite - v1.1.1

v1.1.1 (2025-06-12)

Bug Fixes

• Setup qemu to support building docker containers for arm (189568a)

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Detailed Changes: v1.1.0...v1.1.1

- Jupyter Notebook
Published by ucsd-e4e-role 9 months ago

fishsense-lite - v1.1.0

v1.1.0 (2025-06-12)

Features

• Create docker container for package. (4460703)

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Detailed Changes: v1.0.0...v1.1.0

- Jupyter Notebook
Published by ucsd-e4e-role 9 months ago

fishsense-lite - v1.0.0

v1.0.0 (2025-06-10)

Bug Fixes

• Add bump to dockerfile (e3346dc)

• Add calculate laser coord to pipeline (48f67b2)

• Add missing setter for psqlconnectionstring for detect slate for dives (ca5bcc0)

• Apt-get instead of apt (460d358)

• Auto versioning (cde9347)

• Avoid debug conflicts (418c123)

• Bug causing jpgs to be white when preprocessing. (c0dde50)

• Bug that prevents creating json file if jpg already exits. (ed709da)

• Can't use -p for prefix in label studio (d9f699e)

• Cast to ubyte before displaying the laser (394cef3)

• Check for none and exit early (9b70ded)

• Check if laser_coords is None (dddc3f9)

• Check rawpy for error (12cbb03)

• Convert string keys to path (a09b05d)

• Correct device (efcaa9d)

• Correct typo in json format (cc1e929)

• Correctly return status for calculating points of interest (e22785c)

• Default port number if not specified (1db035e)

• Delete tools cache (a639ded)

• Devcontainer works correctly (9655568)

• Docker container build (7655318)

• Docker container build (35df60d)

• Dockerfile pull from right container (15af32d)

• Don't attempt to calibrate if we do not have enough 3d laser position (890e24a)

• Don't build docker container in GH actions (7c4bdfe)

• Don't calibrate if we have less than 4 valid points (f62243a)

• Don't encode the prefix. (7d1a8b4)

• Don't pylint yet (17e1ab8)

• Don't reference lens calibration in many of the method calls for calculate laser coord (76c4355)

• Duped keyword argument (b36cacf)

• Ensure the correct bit depth is passed aroundg (143f07c)

• Get the cuda group not the groupname group (3628a35)

• Handle img and laser image coords being null in display laser (ec5be45)

• Handle not finding laser (f89336d)

• Handle not finding the laser (8010912)

• If lens or laser calibration does not exist, return none (6ff4679)

• Img not img-1 for target (d033dca)

• Install libopencv-dev (e8e3798)

• Label studio expects 8 bit masks, not boolean (6f8badd)

• Label studio looks for a list of objects (686bc16)

• Make sure to export the type we expect for dives (d3ab510)

• Make the debug path (1ad4793)

• Missing argument (ac25d01)

• Move bump to before install (bc114ee)

• Need ray default not ray core for kube cluster (e1e91b0)

• Only store a single json task per file (cb54a98)

• Pass in pdf object not path (65f9052)

• Pass in the module name for finding the version (9cd6ba6)

• Prefix should not be required (d3a360a)

• Print more information during process (48f3b7b)

• Processing issues (c68e11d)

• Proper tuple for points of interest (be751c7)

• Pyproject toml (227a9a2)

• Reference error (a0cbe7b)

• Reference the static file (d0f4ce1)

• Register field calibrate laser job (0add893)

• Return a proper job count (4655123)

• Revert to using a dict instead of a list (a98bf1d)

• Shm-size (455b56b)

• Specify git repo (dce9c5d)

• Support early exit for preprocess (0368a71)

• Support proper globs in preprocess (96ab752)

• Support vulkan in docker container (b222ed9)

• Switch raw processor module (e904dbc)

• Switch to not building runtime on github actions (81b700d)

• Too many values to unpack (cf5d7c1)

• Try to install fishsense.rs (1cc8016)

• Typo (ae8741c)

• Typos (8f2fb9f)

• Up the vram requirement for nn_laser label studio (8c6414f)

• Up the vram requirement for nn_laser label studio (708a2ce)

• Update raw processing and laser detection (de881b4)

• Use git commit id for bump (08ace50)

• Use red for laser instead of blue (87d55b4)

• Use string as key for dictionary (677ff1e)

• Use sudo to install libopencv (817957e)

• Use the old raw processor correctly (89a7ba9)

• Use the old raw processor in preprocess. (17b0b89)

• Use the right orientation of the pdf for the debug images (650d1ba)

• Wrong attribute name. (010807a)

Chores

• Create dependabot.yml (c28d6ca)

• Poetry lock (5888d71)

• Poetry lock update (535127e)

• Poetry update (59ac833)

• Poetry update (4304997)

• Poetry update (776fa65)

• Poetry update (6bb601b)

• Poetry update (9fa120e)

• Poetry update (3c81647)

• Poetry updatE (96a2a48)

• Poetry updatE (0d71cf0)

• Poetry update (b7af997)

• Poetry.lock (1c9bbb9)

• Poetry.lock update (d9215d6)

• Poetry.lock update (b01222e)

• Pylint fixes (f2219a3)

• Rename (adc1668)

• Update (3f6e5df)

• Update fishsense-common (ee4b72d)

• Update fishsense-common (c58beb7)

• Update packages (694d35b)

• Update poetry lock (011445b)

• Update poetry lock (d3d49e7)

• Update poetry lock (89c16cc)

• Update poetry lock (667e559)

• Update poetry lock (09f3ed6)

• Update poetry lock (8fa4054)

• Update poetry.lock (2f3de7c)

• Update poetry.lock (5723eaf)

• Update poetry.lock (0596044)

• Update poetry.lock (9549aeb)

• Update poetry.lock (5c2dbdf)

• Update poetry.lock (8f874e5)

• Update poetry.lock (4218434)

• Update poetry.lock (ccd8713)

• Update poetry.lock (4a898c0)

• Update poetry.lock (d3cfca8)

• Update poetry.lock (17463d1)

• Update poetry.lock (d283a8c)

• Update poetry.lock (65a97f6)

• Update poetry.lock (190a015)

• Update poetry.lock (d3f2754)

• Update pyfishsensedev (ed7f374)

• Update pyfishsensedev (10a34ca)

• Update pyproject.toml and poetry.lock (ba6d280)

• Upgrade to python 3.12 and cleanup dev container (3660dda)

• deps: Bump requests from 2.32.3 to 2.32.4 (4457668)

• deps-dev: Bump tornado from 6.4.1 to 6.4.2 (5e5895c)

Features

• Add gitignore (540e308)

• Allow rotating the pdf (c5324be)

• Allow stopping of execution and recovery (aacf914)

• Better distribute the vram across the gpus (781bc2f)

• Better raw processing and seathru (e4b9c89)

• Bump again (db0e3de)

• Create a json file per photo (725058f)

• Cudnn in dockerfile (1d30917)

• Define preprocess as tasks (2872c7e)

• Demo with smb for preprocess (5aed8e1)

• Error measurements for both lens and laser calibration (3ad5507)

• Fallback to not using seathru when seathru fails (7fffd82)

• Field calibrate laser (bf8cbc8)

• Full processing pipeline (86fa251)

• Generate fishial masks (531ab0c)

• Handle camera calibration in fsl cli (3a074dd)

• Introduce preprocess with laser label (de98ea5)

• Keep slate counts instead of raw names (80d0fa4)

• Label studio generator (c1c447d)

• Make the laser label yellow. check for pdb better (9391649)

• More none checking (508699a)

• Move some of the torch imports inside methods to work towards improving performance (3229336)

• None checking (e6f3467)

• Output mask as part of execution for fishial (ec1de42)

• Preprocess allows using fsspec (67eb354)

• Print each item added to db (515e866)

• Print the up vector on the slate debug (34fba74)

• Pylint (4865bc7)

• Readd debug (0eecf8f)

• Round the up vector in the display (d0d706d)

• Scale based off of how much vram we use (23177f5)

• Semantic release (14fff4a)

• Specify psql password as part of the docker run (723b737)

• Support adding prefix to the output json files (cc8d820)

• Support detecting slate for dives (b27fc7d)

• Support preprocessing with laser using psql (0e00096)

• Support trying multiple rotations of the dive slate (4f7ef78)

• Switch to using jobs instead of cli. first job has been created for preprocess (4c2586f)

• Turn on bump (f1f9fe9)

• Update docker build script to better ensure we have access to gpus (c545a0d)

• Update to use upstream fishsense docker container instead of one built here (377ac38)

• Use devcontainer features of vscode instead of setup script. (d0b5d89)

• Write checkerboard image to debug folder (eca95ee)

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Detailed Changes: v0.1.0...v1.0.0

- Jupyter Notebook
Published by ucsd-e4e-role 9 months ago