Data

Tools

Indexes

Applications

Experiments

Open Source Science

bdms-sim

A tree simulator for birth-death-mutation-sampling processes

https://github.com/dewitt-lab/bdms

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.0%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

A tree simulator for birth-death-mutation-sampling processes

Basic Info
Statistics
  • Stars: 3
  • Watchers: 5
  • Forks: 1
  • Open Issues: 5
  • Releases: 9
Created over 2 years ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.md

build and test docs build and deploy PyPI package DOI

BDMS

Tree simulator for birth-death-mutation-sampling (BDMS) processes

Documentation: https://dewitt-lab.github.io/BDMS

Owner

  • Name: DeWitt Lab
  • Login: dewitt-lab
  • Kind: organization
  • Location: United States of America

Computational biology research at the University of Washington

Citation (CITATION.cff) 

cff-version: 1.2.0
title: BDMS
message: 'If you use BDMS in your work, please cite as follows.'
authors:
  - given-names: William S.
    family-names: DeWitt
    affiliation: 'University of Washington, Seattle'
    email: wsdewitt@uw.edu
    orcid: 'https://orcid.org/0000-0002-6802-9139'
  - given-names: Michael
    family-names: Celentano
    affiliation: 'University of California, Berkeley'
    email: mcelentano@berkeley.edu
    orcid: 'https://orcid.org/0000-0001-9474-1827'
  - given-names: Thanasi
    family-names: Bakis
    affiliation: 'University of California, Irvine'
    email: abakis@uci.edu
    orcid: 'https://orcid.org/0000-0002-5730-1483'
  - given-names: Duncan K.
    family-names: Ralph
    affiliation: Fred Hutchinson Cancer Center
    email: dralph@fredhutch.org
    orcid: 'https://orcid.org/0000-0002-2527-8610'
  - given-names: Sebastian
    family-names: Prillo
    affiliation: 'University of California, Berkeley'
    email: sprillo@berkeley.edu
    orcid: 'https://orcid.org/0000-0002-2427-8627'
  - given-names: Frederick A.
    family-names: Matsen
    name-suffix: IV
    affiliation: Fred Hutchinson Cancer Center
    email: matsen@fredhutch.org
    orcid: 'https://orcid.org/0000-0003-0607-6025'
  - given-names: Yun S.
    family-names: Song
    affiliation: 'University of California, Berkeley'
    email: yss@berkeley.edu
    orcid: 'https://orcid.org/0000-0002-0734-9868'
  - given-names: Volodymyr M.
    family-names: Minin
    affiliation: 'University of California, Irvine'
    email: vminin@uci.edu
    orcid: 'https://orcid.org/0000-0002-1917-9288'
doi: 10.5281/zenodo.10467425
url: 'https://dewitt-lab.github.io/BDMS'

GitHub Events

Total
  • Create event: 3
  • Issues event: 2
  • Release event: 1
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 7
  • Member event: 2
  • Push event: 8
  • Pull request event: 3
Last Year
  • Create event: 3
  • Issues event: 2
  • Release event: 1
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 7
  • Member event: 2
  • Push event: 8
  • Pull request event: 3

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 4
  • Total pull requests: 7
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Total issue authors: 3
  • Total pull request authors: 3
  • Average comments per issue: 2.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 4
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 10 minutes
  • Issue authors: 3
  • Pull request authors: 2
  • Average comments per issue: 2.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • cbennington852 (2)
  • wsdewitt (1)
  • LeoFeatherstone (1)
Pull Request Authors
  • wsdewitt (5)
  • cbennington852 (2)
  • mcelentano (1)
Top Labels
Issue Labels
bug (1) documentation (1)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 30 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
pypi.org: bdms-sim

Tree simulator for birth-death-mutation-sampling (BDMS) processes

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 30 Last month
Rankings
Dependent packages count: 9.9%
Downloads: 23.8%
Average: 32.9%
Dependent repos count: 65.2%
Maintainers (1)
wsdewitt
Last synced: 6 months ago