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thesis_code

The code used throughout the thesis for the analysis of badger movement.

https://github.com/jfurber/thesis_code

Science Score: 44.0%

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    Low similarity (6.5%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

The code used throughout the thesis for the analysis of badger movement.

Basic Info
  • Host: GitHub
  • Owner: JFurber
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 105 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 8 months ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.md

Analysis of Badger Movement - Thesis

Files for the analysis of GPS badger movement in relation to the Thesis by Jessica Furber.

Files include:

  • Initial modelling strategies (Chapter 3)
  • Conversion of coordinates from Latitude/Longitude to Easting/Northing (and back) (Chapter 4) - R coding
  • Code to estimate metastable states (Chapter 5), including:
    1. Interpolation of coordinates for correct format of data for extended dynamic mode decomposition - Matlab
    2. Generation of metastable states via extended dynamic mode decomposition (EDMD) - Python
  • Code to calculate the model (Chapter 6), including:
    1. Estimation of diffusion and statistical analysis - Python, Matlab, and R
    2. Creation of KDE and GMM potential - Python
    3. Estimation of mountain passes - Python
    4. Comparison of potentials - Python
    5. Simulation (with Attraction and Repuslion (AR) and without) - Python

You will also require to download the folder d3s from https://github.com/sklus/d3s in order to use the EDMD.py file.

The GPS tracking data of badger movements, collected from Cornwall, are lodged on Movebank (www.movebank.org; Movebank Project 158275131). For the GPS tracking data of badger movements, collected from Woodchester, please contact data access at APHA on badgerdata@apha.gov.uk. The GPS tracking data of badger movements, collected from Northern Ireland, are lodged on Movebank (www.movebank.org; Movebank Project 5019193945).

Owner

  • Login: JFurber
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Furber"
  given-names: "Jessica Rachel"
  orcid: "https://orcid.org/0009-0008-4003-7920"
title: "Mathematical Analysis of Fine-Scale Badger Movement Data"
version: 1.0
doi: 
date-released: 
url: "https://github.com/JFurber/Thesis_Code"

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