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wrepco-workshop

https://github.com/mcroe/wrepco-workshop

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: mcRoe
  • License: mit
  • Default Branch: main
  • Size: 4.88 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 8 months ago · Last pushed 8 months ago
Metadata Files
Readme License Citation

README.md

DOI

averageAll after pca classification in Imod's PEET

This script takes output from clusterPCA run from Imod's PEET software and: 1. Renames basenameMOTLIter.csv to *basenameMOTLIter*.csv.bak 2. Renames pca_basenameMOTLIter.csv to *basenameMOTLIter*.csv 3. Run create class averages through averageAll

Dependencies:

  • Python

(Following packages are found on https://bio3d.colorado.edu/)
- Imod 4.10 or greater - PEET 13.0 or greater

Options:

  • -b or --basename Similar to the fn name in the imod project

(optional)
- -r or --revert Reverts the .bak files to original. USE THIS FLAG WITH CARE: OPERATION WILL OVERWRITE PCA RESULTS

Usage:

'avgAllafter.py -b 01bin4_tomo01'

Owner

  • Login: mcRoe
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
title: "My Research Software"
authors:
  - family-names: Druskat
    given-names: Stephan
version: 2.0.4
date-released: 2021-08-11
license: Apache-2.0
repository-code: "https://github.com/citation-file-format/my-research-software"

GitHub Events

Total
  • Release event: 2
  • Push event: 7
  • Create event: 3
Last Year
  • Release event: 2
  • Push event: 7
  • Create event: 3

Dependencies

requirements.txt pypi