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wrepco-workshop

https://github.com/mcroe/wrepco-workshop

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.0%) to scientific vocabulary
Last synced: 9 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: mcRoe
  • License: mit
  • Default Branch: main
  • Size: 4.88 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 11 months ago · Last pushed 11 months ago
Metadata Files
Readme License Citation

README.md

DOI

averageAll after pca classification in Imod's PEET

This script takes output from clusterPCA run from Imod's PEET software and: 1. Renames basenameMOTLIter.csv to *basenameMOTLIter*.csv.bak 2. Renames pca_basenameMOTLIter.csv to *basenameMOTLIter*.csv 3. Run create class averages through averageAll

Dependencies:

  • Python

(Following packages are found on https://bio3d.colorado.edu/)
- Imod 4.10 or greater - PEET 13.0 or greater

Options:

  • -b or --basename Similar to the fn name in the imod project

(optional)
- -r or --revert Reverts the .bak files to original. USE THIS FLAG WITH CARE: OPERATION WILL OVERWRITE PCA RESULTS

Usage:

'avgAllafter.py -b 01bin4_tomo01'

Owner

  • Login: mcRoe
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
title: "My Research Software"
authors:
  - family-names: Druskat
    given-names: Stephan
version: 2.0.4
date-released: 2021-08-11
license: Apache-2.0
repository-code: "https://github.com/citation-file-format/my-research-software"

GitHub Events

Total
  • Release event: 2
  • Push event: 7
  • Create event: 3
Last Year
  • Release event: 2
  • Push event: 7
  • Create event: 3

Dependencies

requirements.txt pypi