Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
5 of 39 committers (12.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.8%) to scientific vocabulary
Keywords from Contributors
neuroimaging
Last synced: 6 months ago
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JSON representation
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Repository
IBL core shared libraries
Basic Info
Statistics
- Stars: 63
- Watchers: 26
- Forks: 37
- Open Issues: 95
- Releases: 65
Created over 7 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
License
Citation
README.md
IBL Python Libraries
Description
Library used to implement the International Brain Laboratory data pipeline. Currently in active development. The library is currently 2 main modules: - brainbox: neuroscience analysis oriented library - ibllib: general purpose library containing I/O, signal processing and IBL data pipelines utilities.
Requirements
OS: Only tested on Linux. Windows and Mac may work, but are not supported.
Python Module: Python 3.10 or higher, Python 3.12 recommended
Installation, documentation and examples
https://docs.internationalbrainlab.org
Contribution and development practices
See https://int-brain-lab.github.io/iblenv/07_contribution.html
We use Semantic Versioning.
Before committing to your branch:
- check formating flake8
- run tests python -m unittest discover
Pull request to develop or main.
Matlab Library
The Matlab library has moved to its own repository here: https://github.com/int-brain-lab/ibllib-matlab/
Owner
- Name: International Brain Laboratory
- Login: int-brain-lab
- Kind: organization
- Website: https://www.internationalbrainlab.com/
- Twitter: IntlBrainLab
- Repositories: 41
- Profile: https://github.com/int-brain-lab
Citation (CITATION.cff)
cff-version: 0.0.0
message: "If you use this software, please cite it as below."
authors:
- family-names: International Brain Laboratory
given-names: The
orcid:
title: "ibllib"
version:
doi:
date-released: 2021-12-09
url: "https://github.com/int-brain-lab/ibllib"
GitHub Events
Total
- Create event: 68
- Release event: 4
- Issues event: 140
- Watch event: 1
- Delete event: 50
- Issue comment event: 58
- Push event: 267
- Pull request review comment event: 11
- Pull request review event: 20
- Pull request event: 140
- Fork event: 3
Last Year
- Create event: 68
- Release event: 4
- Issues event: 140
- Watch event: 1
- Delete event: 50
- Issue comment event: 58
- Push event: 267
- Pull request review comment event: 11
- Pull request review event: 20
- Pull request event: 140
- Fork event: 3
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| olivier | o****r@h****r | 1,326 |
| Mayo Faulkner | m****r@u****k | 685 |
| Miles Wells | k****0@3****o | 658 |
| Niccolo Bonacchi | n****i@g****m | 493 |
| Gaelle Chapuis | g****l@g****m | 314 |
| juhuntenburg | j****g@g****m | 225 |
| Olivier Winter | o****r@r****g | 148 |
| Berk Gercek | g****k@g****m | 116 |
| Jai Bhagat | j****t@u****k | 66 |
| Guido | g****r@r****g | 58 |
| Florian Rau | b****c | 44 |
| Michele Fabbri | m****i@i****g | 38 |
| mschart | m****r@g****m | 30 |
| Cyrille Rossant | r****t | 27 |
| Guido Meijer | g****r@g****m | 22 |
| themattinthehatt | t****t@g****m | 19 |
| noamroth | 3****h | 17 |
| Brandon Benson | b****2@g****m | 15 |
| Anne Urai | a****i@g****m | 11 |
| Chris Langfield | 3****d | 9 |
| ibladmin | O****r | 8 |
| stevenjwest | s****t@g****m | 5 |
| Kenneth Harris | k****s@u****k | 5 |
| Baicai Ye | y****i@f****m | 5 |
| Hyun Dong Lee | h****5@g****m | 4 |
| Dan Birman | d****n@g****m | 3 |
| Georg Raiser | g****r@g****m | 3 |
| Nick Steinmetz | n****z@g****m | 3 |
| chris-langfield | c****d@i****g | 2 |
| Alex Pan | a****n@g****m | 2 |
| and 9 more... | ||
Committer Domains (Top 20 + Academic)
ucl.ac.uk: 4
internationalbrainlab.org: 3
research.fchampalimaud.org: 2
tk.co: 1
tuebingen.mpg.de: 1
foxmail.com: 1
3tk.co: 1
Packages
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 1
conda-forge.org: brainbox-ibl
- Homepage: https://github.com/int-brain-lab/ibllib
- License: MIT
-
Latest release: 1.0.0
published over 6 years ago
Rankings
Forks count: 28.2%
Dependent repos count: 34.0%
Stargazers count: 37.7%
Average: 37.8%
Dependent packages count: 51.2%
Last synced:
6 months ago
Dependencies
.github/workflows/ibllib_ci.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
.github/workflows/python-publish.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
requirements-analysis.txt
pypi
- click >=7.0.0
- colorlog >=4.0.2
- datajoint *
- flake8 >=3.7.8
- globus-sdk >=1.7.1
- ipython *
- jupyter >=1.0
- jupyterlab >=1.0
- matplotlib >=3.0.3
- mtscomp >=1.0.1
- numpy >=1.16.4
- opencv-python *
- pandas >=0.24.2
- phylib >=2.2
- pynrrd >=0.4.0
- pyqt5 *
- pyqtgraph *
- requests >=2.22.0
- scikit-learn >=0.22.1
- scipy >=1.3.0
- seaborn >=0.9.0
- torch >=1.6.0
- tqdm >=4.32.1
requirements.txt
pypi
- ONE-api >=1.19.1
- boto3 *
- click >=7.0.0
- colorlog >=4.0.2
- flake8 >=3.7.8
- globus-sdk ==3.2.1
- graphviz *
- ibl-neuropixel >=0.4.0
- iblutil >=1.5.0
- jupyter >=1.0
- jupyterlab >=1.0
- labcams *
- matplotlib >=3.0.3
- mtscomp >=1.0.1
- nptdms *
- numba >=0.56
- numpy >=1.18
- opencv-python-headless *
- pandas >=0.24.2
- phylib >=2.4
- pyarrow *
- pynrrd >=0.4.0
- pytest *
- requests >=2.22.0
- scikit-learn >=0.22.1
- scipy >=1.7.0
- seaborn >=0.9.0
- slidingRP >=1.0.0
- tqdm >=4.32.1
- wfield >=0.3.6
setup.py
pypi