https://github.com/kull-centre/prism - rosetta pipeline version v0.2.6

Oligomer/ligands: - remove several bugs - allow more options, including ligands and hetero-WT-oligomers

MP-pipeline: - add some defaults for deepTMHMM Postprocessing: - bugfix postprocessing (with oligomers)

- Python
Published by j0kaso almost 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2.5

Change pdb alignment & fix some bugs: - new default pdb aligner: MMLigner - bugs for deepTM

- Python
Published by j0kaso almost 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2.4

deepTMHMM flags - remove space in output prism flag - add retry and sleep mode when server is busy (random time with 5 tries) - fix-bb before alignment with span (can cause problems otherwise - takes quite long) - change default chain when using align by span option (Rosetta autosets to A)

general - change default ddG parsing time to 10h - update tests

- Python
Published by j0kaso almost 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2.3

• bugfixes esp for restart
• add mp pipeline option for using deepTMHMM to define span region
• align protein based on span region

- Python
Published by j0kaso almost 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2.2

add prism parser static files: - software/scripts/FillVariants.py - software/scripts/PrismData.py - software/scripts/strucselectsifts.py

- Python
Published by j0kaso about 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2.1

rosetta-stability-pipeline: - bugfix ligand=True runs - bugfix dump pdb flag in soluble pipeline - correction of consistency check based on processed structure (not initial) for post-relax - update of unittest + adding of ligand checking to sp-test - update of test and README/documentation

- Python
Published by j0kaso about 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.2

rosetta-stability-pipeline:

• add E_res output prism file
• MPprep alignments on TM region
• bugfix & issues among: HETATOM, closing of loops, restarts, multi-mut parsing, scaling defaults,
• add process feature that checks for present files
• add consistency checking for files after relax
• restart ddG runs if not finished for soluble pipeline (useful for bigger proteins)
• update of test and README/documentation

- Python
Published by j0kaso over 4 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.1.1

rosetta-stability-pipeline:

• MPcartesian ∆∆G run

• restart ddG runs if not finished for soluble pipeline (useful for bigger proteins)

- Python
Published by j0kaso almost 5 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.1

rosetta-stability-pipeline: - MP pipeline - prism output files (incl git versioning) - (homo)dimer option - mut-file handling, including multi-mutations - sci/unit-test - dump pdbs - emission stats - zipping of folder - several bugfixes and issues

- Python
Published by j0kaso about 5 years ago

https://github.com/kull-centre/prism - rosetta pipeline version v0.0

Nov 2020 version (last active Version from Anders)

- Python
Published by j0kaso about 5 years ago

https://github.com/kull-centre/prism - working release for master

Stability pipeline status from Nov 2020 (last commits from @andershbf)

- Python
Published by j0kaso over 5 years ago