https://github.com/kull-centre/_2023_martinez-perez-amv-ect
Science Score: 8.0%
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Low similarity (2.1%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: KULL-Centre
- License: gpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.02 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
2023martinez-perez-AMV-ECT
This repository contains code to reproduce simulation results and figures in Martinez et al., 2023.
Re-running simulations:
- submit.py
- simulate.py
- analyse.py
Main notebook to reproduce figures:
- analyseect2AMV.ipynb
Protein sequences used:
ECT2 N-terminus: MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPMLPSDAADPSVCYVPNPYN PYQYYNVYGSGQEWTDYPAYTNPEGVDMNSGIYGENGTVVYPQGYGYAAYPYSPATSPAPQLGGEGQLYGAQQYQYPNYFPNSGPYASSVATPTQPDLSANKPA GVKTLPADSNNVASAAGITKGSNGSAPVKPTNQATLNTSSNLYGMGAPGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVPSSR NQNYRSNSHYTSVHQPSSVTGYGTAQGYYNRMYQNKLYGQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGT KNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYA
ECT2 N-terminus delN5: MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPMLPSDAADPSVCYV PNPYNPYQYYNVYGSGQEWTDYPAYTNPEGVDMNSGIYGENGYASSVATPTQPDLSANKPAGVKTLPADSNNVASAAGITKGSNGSAPVKPTNQATLNTSSNLY GMGAPGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVPSSRNQNYRSNSHYTSVHQPSSVTGYGTAQGYYNRMYQNKLYGQYGS TGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVPDREQYNKE DFPVDYA
ECT2 N-terminus 9xYA: MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVDVHGQVPSYDRSLTPMLPSDAADPSVCYVPNPYN PYQYYNVYGSGQEWTDYPAYTNPEGVDMNSGIYGENGTVVAPQGAGAAAAPASPATSPAPQLGGEGQLAGAQQAQAPNAFPNSGPYASSVATPTQPDLSANKPA GVKTLPADSNNVASAAGITKGSNGSAPVKPTNQATLNTSSNLYGMGAPGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVPSSR NQNYRSNSHYTSVHQPSSVTGYGTAQGYYNRMYQNKLYGQYGSTGRSALGYGSSGYDSRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGT KNQKGNLDDSLEVKEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYA
A1: GSMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQ SSNFGPMKGGNFGGRSSGGSGGGGQYFAKPRNQGGYGGSSSSSSYGSGRRF
FUS: MASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYG QSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQS SSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNS
Owner
- Name: Linderstrøm-Lang Centre for Protein Science, University of Copenhagen
- Login: KULL-Centre
- Kind: organization
- Location: Copenhagen, Denmark
- Website: https://www1.bio.ku.dk/english/research/bms/research/llc/
- Repositories: 8
- Profile: https://github.com/KULL-Centre