https://github.com/kundajelab/e2g-frontend

https://github.com/kundajelab/e2g-frontend

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.4%) to scientific vocabulary
Last synced: 4 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: kundajelab
  • License: apache-2.0
  • Language: TypeScript
  • Default Branch: main
  • Size: 15.8 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created 9 months ago · Last pushed 7 months ago
Metadata Files
Readme Contributing License Code of conduct

README.md

Enhancer2Gene (E2G) Portal

This repository holds the Enhancer2Gene (E2G) portal.

Required stack

Running development

This project contains the E2G web application. To run in development mode, you can run: yarn dev in the root directory.

Building production-ready bundle

From the root directory run: yarn build. This will generate a production-ready bundle.

Copyright

Copyright 2014-2024 EMBL - European Bioinformatics Institute, Genentech, GSK, MSD, Pfizer, Sanofi and Wellcome Sanger Institute

This software was developed as part of the Open Targets project. For more information please see: http://www.opentargets.org

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Owner

  • Name: Kundaje Lab
  • Login: kundajelab
  • Kind: organization
  • Location: Stanford University

Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.

GitHub Events

Total
  • Issues event: 3
  • Watch event: 1
  • Delete event: 3
  • Issue comment event: 1
  • Push event: 13
  • Pull request review event: 2
  • Pull request review comment event: 1
  • Pull request event: 8
  • Create event: 4
Last Year
  • Issues event: 3
  • Watch event: 1
  • Delete event: 3
  • Issue comment event: 1
  • Push event: 13
  • Pull request review event: 2
  • Pull request review comment event: 1
  • Pull request event: 8
  • Create event: 4

Dependencies

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Dockerfile docker
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apps/platform/Dockerfile docker
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yarn.lock npm
  • 1246 dependencies