https://github.com/kundajelab/retina-design
Designing AAV sequences for retinal cell types (with scATAC-seq models)
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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✓DOI references
Found 6 DOI reference(s) in README -
○Academic publication links
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.7%) to scientific vocabulary
Repository
Designing AAV sequences for retinal cell types (with scATAC-seq models)
Basic Info
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Uses models trained here: https://github.com/kundajelab/retina-models, available here: https://doi.org/10.5281/zenodo.6330052, associated with https://doi.org/10.1016/j.xgen.2022.100164. See https://github.com/kundajelab/retina-design/tree/main/src/20220503_design/out/v1 for an overview of how enhancers were designed to target Retinal ganglion and Horizontal cells.
Associated model interpretation and TF-MoDISco outputs can be found at https://doi.org/10.5281/zenodo.14061304.
Owner
- Name: Kundaje Lab
- Login: kundajelab
- Kind: organization
- Location: Stanford University
- Website: http://anshul.kundaje.net
- Repositories: 117
- Profile: https://github.com/kundajelab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
GitHub Events
Total
- Public event: 1
- Push event: 6
Last Year
- Public event: 1
- Push event: 6