wikipedia

Wikipedia chemical structure explorer

https://github.com/cheminfo/wikipedia

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Committers with academic emails
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (8.2%) to scientific vocabulary

Keywords from Contributors

mesh interpretability sequences generic projection interactive optim hacking network-simulation
Last synced: 6 months ago · JSON representation ·

Repository

Wikipedia chemical structure explorer

Basic Info
Statistics
  • Stars: 58
  • Watchers: 12
  • Forks: 16
  • Open Issues: 8
  • Releases: 1
Created about 11 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

Wikipedia Chemical Structure Explorer

DOI

This application as been published here.

https://wikipedia.cheminfo.org

Install locally

There are two ways for having the website on a local server.

Zip archive

You can download the latest version directly on GitHub.

Easy updates with git

If you plan on updating regularly, you can use git :

bash git clone https://github.com/cheminfo/wikipedia.git

Then to update :

bash cd wikipedia git pull

Build and serve the website

To build the site, Node.js v20 is needed.

bash npm ci npm run build

This generates the website in the dist directory. It is a simple static site that can be served from any web server.

Data synchronization with Wikipedia

The dump directory contains the scripts used to synchronize the data files using the Wikipedia API. They are NOT needed for the website to work and can be ignored by most people.

bash npm ci cd dump ./dump.sh

License

This project is released under The BSD License.

Owner

  • Name: Cheminfo
  • Login: cheminfo
  • Kind: organization

Citation (CITATION.cff)

cff-version: 1.2.0
title: 'Wikipedia Chemical Structure Explorer: substructure and similarity searching of molecules from Wikipedia'
doi: 10.1186/s13321-015-0061-y
url: 'https://wikipedia.cheminfo.org'
repository-code: 'https://github.com/cheminfo/wikipedia'
license: BSD-3-Clause
authors:
  - family-names: 'Ertl'
    given-names: 'Peter'
  - family-names: 'Patiny'
    given-names: 'Luc'
  - family-names: 'Sander'
    given-names: 'Thomas'
  - family-names: 'Rufener'
    given-names: 'Christian'
  - family-names: 'Zasso'
    given-names: 'Michaël'

GitHub Events

Total
  • Issues event: 5
  • Watch event: 3
  • Delete event: 18
  • Issue comment event: 27
  • Push event: 274
  • Pull request review event: 1
  • Pull request event: 29
  • Fork event: 1
  • Create event: 13
Last Year
  • Issues event: 5
  • Watch event: 3
  • Delete event: 18
  • Issue comment event: 27
  • Push event: 274
  • Pull request review event: 1
  • Pull request event: 29
  • Fork event: 1
  • Create event: 13

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 3,992
  • Total Committers: 6
  • Avg Commits per committer: 665.333
  • Development Distribution Score (DDS): 0.06
Past Year
  • Commits: 355
  • Committers: 3
  • Avg Commits per committer: 118.333
  • Development Distribution Score (DDS): 0.051
Top Committers
Name Email Commits
cheminfo bot a****n@c****g 3,754
Michaël Zasso m****e@g****m 200
lpatiny l****y 17
Mounia 7****r 16
dependabot[bot] 4****] 4
root r****t@b****m 1
Committer Domains (Top 20 + Academic)

Dependencies

.github/workflows/update-data.yml actions
  • actions/cache v3 composite
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
package-lock.json npm
  • 428 dependencies
package.json npm
  • @types/react ^18.0.26 development
  • @types/react-dom ^18.0.10 development
  • @types/react-router-dom ^5.3.3 development
  • @types/react-virtualized-auto-sizer ^1.0.1 development
  • @types/react-window ^1.8.5 development
  • @vitejs/plugin-react ^3.0.1 development
  • @zakodium/eslint-config ^6.0.0 development
  • autoprefixer ^10.4.13 development
  • eslint ^8.31.0 development
  • mf-parser ^2.0.0 development
  • openchemlib ^8.1.0 development
  • postcss ^8.4.21 development
  • prettier ^2.8.2 development
  • prettier-plugin-tailwindcss ^0.2.1 development
  • progress ^2.0.3 development
  • tailwindcss ^3.2.4 development
  • typescript ^4.9.4 development
  • use-resize-observer ^9.1.0 development
  • vite ^4.0.4 development
  • @headlessui/react ^1.7.7
  • @types/react-virtualized ^9.21.21
  • clsx ^1.2.1
  • openchemlib-utils ^2.1.3
  • react ^18.2.0
  • react-dom ^18.2.0
  • react-icons ^4.7.1
  • react-mf ^2.0.2
  • react-ocl ^5.0.0
  • react-router-dom ^6.6.2
  • react-viewport-list ^6.3.0
  • react-virtualized-auto-sizer ^1.0.7
  • react-window ^1.8.8
.github/workflows/nodejs.yml actions