mashwrapper - version 3.2.2

Change log

• Added information required by ShareIT-Act

- Groovy
Published by jennahamlin 8 months ago

mashwrapper - version 3.2.1

Change log

• With updating ncbi command lines tools from 15.2.0 to 18.2.0 had to change assminfo-paired-assmaccession to assminfo-paired-assm-accession

- Groovy
Published by jennahamlin 8 months ago

mashwrapper - version 3.1.0

Change log

• NCBI command line tools version change from 15.2.0 -> 18.2.0
  • After attempting to download genomes for Lp, could not successfully download all. Issues on NCBI datasets suggested newer versions dealt with larger download easier.

- Groovy
Published by jennahamlin 8 months ago

mashwrapper - version 3.0.0

Change log

• downloadGenome.sh
  • uses dataformat function for better parsing rather than awk
• runspeciesid.py:
  • better error out if there are no reads associated with a pair of reads
  • additionally refactoring to remove redundancy

- Groovy
Published by jennahamlin 8 months ago

mashwrapper - v2.0.0

Fixed the print for K-mer size on the result file.

- Groovy
Published by jennahamlin over 1 year ago

mashwrapper - 2.0

Refactor code for general clean-up of code

- Groovy
Published by jennahamlin over 1 year ago