fmripost-aroma - 0.0.12

This release mostly fixes a bug where, when ICA-AROMA didn't find any noise components, the denoising nodes would fail.

What's Changed

🐛 Bug Fixes

• Set zooms of non-aggressively denoised image by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/120
• Write out confounds file even when no components are rejected by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/123
• Fix bug in _get_ica_confounds by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/124 ### Other Changes
• Bump docker/build-push-action from 6.15.0 to 6.16.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/117
• add README badges by @smeisler in https://github.com/nipreps/fmripost-aroma/pull/118

New Contributors

• @smeisler made their first contribution in https://github.com/nipreps/fmripost-aroma/pull/118

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.11...0.0.12

- Python
Published by tsalo about 1 year ago

fmripost-aroma - 0.0.11

What's Changed

🐛 Bug Fixes

• Add missing entities to outputs by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/114 ### Other Changes
• Bump docker/login-action from 3.3.0 to 3.4.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/113

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.10...0.0.11

- Python
Published by tsalo about 1 year ago

fmripost-aroma - 0.0.10

What's Changed

🐛 Bug Fixes

• Expect flat bids_filters across package by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/110
• Use BIDS filter in file-wise queries by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/111

Other Changes

• Bump docker/metadata-action from 5.6.1 to 5.7.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/106
• Bump docker/build-push-action from 6.13.0 to 6.15.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/107

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.9...0.0.10

- Python
Published by tsalo about 1 year ago

fmripost-aroma - 0.0.9

What's Changed

🐛 Bug Fixes

• Allow run entity in transform filename by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/90
• Allow "2" and "02" for resolution entity by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/97
• Search for anatomical data across sessions when a given session does not have any by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/98
• Use anat2mni152nlin6asym for query by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/99
• Include BIDS filters in anatomical data queries by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/102 ### Other Changes
• Bump docker/build-push-action from 6.7.0 to 6.9.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/80
• rf(py314): Replace deprecated pkgutil.find_loader by @effigies in https://github.com/nipreps/fmripost-aroma/pull/81
• FIX: Gracefully warn when no motion components are found by @jczimm in https://github.com/nipreps/fmripost-aroma/pull/83
• Bump docker/setup-buildx-action from 3.6.1 to 3.7.1 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/84
• Bump docker/metadata-action from 5.5.1 to 5.6.1 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/89
• Bump docker/build-push-action from 6.9.0 to 6.10.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/87
• Bump codecov/codecov-action from 4 to 5 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/88
• Bump docker/setup-buildx-action from 3.7.1 to 3.8.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/91
• Make bug report template fMRIPost-specific by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/92
• chore: Bump minimum Python, rerun auto style fixes by @effigies in https://github.com/nipreps/fmripost-aroma/pull/93
• Bump docker/build-push-action from 6.10.0 to 6.13.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/95
• Convert skeleton dictionaries to YAMLs by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/103
• Bump docker/setup-buildx-action from 3.8.0 to 3.10.0 by @dependabot in https://github.com/nipreps/fmripost-aroma/pull/105

New Contributors

• @dependabot made their first contribution in https://github.com/nipreps/fmripost-aroma/pull/80
• @jczimm made their first contribution in https://github.com/nipreps/fmripost-aroma/pull/83

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.8...0.0.9

- Python
Published by tsalo about 1 year ago

fmripost-aroma - 0.0.8

What's Changed

🐛 Bug Fixes

• Define padded mixing arr if skip_vols are 0 by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/69
• Write out GeneratedBy correctly by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/73
• Treat anatomical data differently in data collection by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/75
• Fix bids-validator installation and usage by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/76
• Limit file collection to specified subject by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/77
• Fix subject collection (again) by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/78

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.7...0.0.8

- Python
Published by tsalo over 1 year ago

fmripost-aroma - 0.0.7

What's Changed

🐛 Bug Fixes

• Fix shape check by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/68

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.6...0.0.7

- Python
Published by tsalo over 1 year ago

fmripost-aroma - 0.0.6

What's Changed

🐛 Bug Fixes

• Allow run in output filenames by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/66
• Fix confound generation by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/67

Other Changes

• Use GenericLabel over MultiLabel by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/64

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.5...0.0.6

- Python
Published by tsalo over 1 year ago

fmripost-aroma - 0.0.5

What's Changed

🎉 Exciting New Features

• Apply transforms to raw data when MNI6 derivatives aren't available by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/58

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.4...0.0.5

- Python
Published by tsalo over 1 year ago

fmripost-aroma - 0.0.4

What's Changed

🛠 Breaking Changes

• Add orthogonalized motion components to confounds file by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/56 ### 🐛 Bug Fixes
• Fix orthaggr confound bug by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/59

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.3...0.0.4

- Python
Published by tsalo almost 2 years ago

fmripost-aroma - 0.0.3

What's Changed

🐛 Bug Fixes

• Fix denoising by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/51 ### Other Changes
• Add carpet plots to output by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/49

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.2...0.0.3

- Python
Published by tsalo almost 2 years ago

fmripost-aroma - 0.0.2

Full Changelog: https://github.com/nipreps/fmripost-aroma/compare/0.0.1...0.0.2

- Python
Published by tsalo almost 2 years ago

fmripost-aroma - 0.0.1

First release of fMRIPost-AROMA. This release will denoise fMRIPrep derivatives, as long as users run fMRIPrep with --output-spaces MNI152NLin6Asym:res-02.

What's Changed

• Copy over ICA-AROMA workflow from fMRIPrep 23.0.2 by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/7
• Work on infrastructure by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/14
• Add CI maintenance scripts by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/19
• STY: Adopt ruff by @effigies in https://github.com/nipreps/fmripost-aroma/pull/20
• Add documentation dependencies by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/22
• Implement AROMA classifier by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/18
• Draft resampling workflow by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/16
• Clean up the workflows by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/25
• Use config values in workflow by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/26
• TEST: Get tests working by @effigies in https://github.com/nipreps/fmripost-aroma/pull/27
• [DATALAD] Added subdataset by @effigies in https://github.com/nipreps/fmripost-aroma/pull/28
• Remove unused dependencies from Docker image by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/30
• Test collect_derivatives function by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/29
• Add HTML report figures back into workflow by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/33
• Add metric reportlet by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/37
• Add other contributors by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/38
• Denoise MNI152NLin6Asym:res-2 by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/40
• Write out compressed denoised files by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/41
• Draft CircleCI configuration by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/43
• Deploy to DockerHub with GitHub Action by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/46
• Update installation documentation by @tsalo in https://github.com/nipreps/fmripost-aroma/pull/47

New Contributors

• @tsalo made their first contribution in https://github.com/nipreps/fmripost-aroma/pull/7
• @effigies made their first contribution in https://github.com/nipreps/fmripost-aroma/pull/20

Full Changelog: https://github.com/nipreps/fmripost-aroma/commits/0.0.1

- Python
Published by tsalo almost 2 years ago