Recent Releases of SBMLToolkit
SBMLToolkit - v0.1.31
SBMLToolkit v0.1.31
Merged pull requests: - CompatHelper: bump compat for Catalyst to 15, (keep existing compat) (#175) (@github-actions[bot]) - Fix master (#177) (@ChrisRackauckas)
Closed issues: - Model import error: ERROR: Cannot handle SymbolicUtils.BasicSymbolic{Bool} types. (#172)
- Julia
Published by github-actions[bot] 10 months ago
SBMLToolkit - v0.1.30
SBMLToolkit v0.1.30
Merged pull requests: - Bump codecov/codecov-action from 4 to 5 (#169) (@dependabot[bot]) - add test for iseventassignment (#171) (@paulflang) - Pl/symbolic bool (#173) (@paulflang)
- Julia
Published by github-actions[bot] about 1 year ago
SBMLToolkit - v0.1.29
SBMLToolkit v0.1.29
Merged pull requests: - fix tests (#168) (@isaacsas)
- Julia
Published by github-actions[bot] over 1 year ago
SBMLToolkit - v0.1.28
SBMLToolkit v0.1.28
Merged pull requests: - CompatHelper: bump compat for SymbolicUtils to 3, (keep existing compat) (#164) (@github-actions[bot]) - Fix Cobraexa URL (#165) (@oxinabox)
- Julia
Published by github-actions[bot] over 1 year ago
SBMLToolkit - v0.1.27
SBMLToolkit v0.1.27
Merged pull requests: - Support Catalyst v14 (#163) (@paulflang)
- Julia
Published by github-actions[bot] over 1 year ago
SBMLToolkit - v0.1.26
SBMLToolkit v0.1.26
Merged pull requests: - Bump actions/checkout from 3 to 4 (#133) (@dependabot[bot]) - Documenter 1.0 upgrade (#135) (@ArnoStrouwen) - Update README.md (#137) (@paulflang) - typos + Aqua CI (#138) (@ArnoStrouwen) - Bump actions/upload-artifact from 3 to 4 (#139) (@dependabot[bot]) - Bump actions/checkout from 3 to 4 (#140) (@dependabot[bot]) - Downgrade CI (#142) (@ArnoStrouwen) - Bump crate-ci/typos from 1.16.23 to 1.17.0 (#143) (@dependabot[bot]) - Bump actions/cache from 3 to 4 (#145) (@dependabot[bot]) - Bump codecov/codecov-action from 3 to 4 (#147) (@dependabot[bot]) - Bump crate-ci/typos from 1.17.0 to 1.18.0 (#148) (@dependabot[bot]) - [skip ci] Update dependabot.yml (#149) (@ArnoStrouwen) - ci: explicitly specify token for codecov (#150) (@thazhemadam) - [skip ci] update downgrade CI repo (#151) (@ArnoStrouwen) - Bump julia-actions/setup-julia from 1 to 2 (#153) (@dependabot[bot]) - Add citation file (#154) (@paulflang) - Bump actions/checkout from 3 to 4 (#155) (@dependabot[bot]) - Add citation.cff (#159) (@paulflang) - omit conversion to mass action for stoichiometries > 100 to avoid StackOverflow in simplify_fractions (#161) (@paulflang)
Closed issues: - Failing CI for v0.1.21 (#118) - Error constructing reaction system from SBML BioModel (#160)
- Julia
Published by github-actions[bot] over 1 year ago
SBMLToolkit - v0.1.25
SBMLToolkit v0.1.25
Merged pull requests: - Support initialAssignments with the DefaultImporter (#132) (@paulflang)
- Julia
Published by github-actions[bot] over 2 years ago
SBMLToolkit - v0.1.24
SBMLToolkit v0.1.24
Merged pull requests: - return correct variable type/metadata in mapsymbolicsident (#130) (@paulflang)
- Julia
Published by github-actions[bot] over 2 years ago
SBMLToolkit - v0.1.23
SBMLToolkit v0.1.23
Merged pull requests: - fix handling g of duplicate speciesReference (#127) (@paulflang) - format (#128) (@paulflang)
- Julia
Published by github-actions[bot] almost 3 years ago
SBMLToolkit - v0.1.22
SBMLToolkit v0.1.22
Merged pull requests: - enable dependabot for GitHub actions (#119) (@ranocha) - Bump actions/checkout from 1 to 3 (#120) (@dependabot[bot]) - Bump actions/cache from 1 to 3 (#121) (@dependabot[bot]) - Bump codecov/codecov-action from 1 to 3 (#122) (@dependabot[bot]) - handle params with initialAssignment (#123) (@paulflang) - add joss paper (#124) (@paulflang) - Create draft-pdf.yml (#125) (@paulflang) - Bump actions/upload-artifact from 1 to 3 (#126) (@dependabot[bot])
- Julia
Published by github-actions[bot] almost 3 years ago
SBMLToolkit - v0.1.21
SBMLToolkit v0.1.21
Merged pull requests: - CompatHelper: bump compat for SymbolicUtils to 1, (keep existing compat) (#104) (@github-actions[bot]) - various doc and style improvements (#109) (@ArnoStrouwen) - CompatHelper: bump compat for Catalyst to 13, (keep existing compat) (#110) (@github-actions[bot]) - support Catalyst v13 (#111) (@paulflang) - Pl/catalistv0.13 (#112) (@paulflang) - Pl/catalystupdate (#113) (@paulflang) - Pl/rescue20230303 (#114) (@paulflang) - Pl/simplify api (#115) (@paulflang) - update docs (#116) (@paulflang) - Fix formatting (#117) (@SebastianM-C)
- Julia
Published by github-actions[bot] almost 3 years ago
SBMLToolkit - v0.1.20
SBMLToolkit v0.1.20
Closed issues: - Write better docstrings (#22) - Warning: SBMLToolkit currently fires events regardless of uppass or downpass trigger. (#101)
Merged pull requests: - use SBML converter that retains initialAssignment (#107) (@paulflang) - disable converting nonconstant parameters to states (#108) (@anandijain)
- Julia
Published by github-actions[bot] about 3 years ago
SBMLToolkit - v0.1.19
SBMLToolkit v0.1.19
Closed issues: - why are we warning about events regardless of if the model has events? (#91)
Merged pull requests: - Fix broken libSBML link in docs (#99) (@xlxs4) - Only warn for events if model has events (#100) (@xlxs4)
- Julia
Published by github-actions[bot] about 3 years ago
SBMLToolkit - v0.1.18
SBMLToolkit v0.1.18
Closed issues: - test/reactionsystem.jl (#93) - ERROR: "Incremental compilation may be fatally broken for this module" error (#96)
Merged pull requests: - reproducible docs (#94) (@ArnoStrouwen) - spelling (#95) (@ArnoStrouwen) - [skip ci] doc compat (#97) (@ArnoStrouwen) - support kwargs[:defaults] in the ReactionSystem constructor (#98) (@paulflang)
- Julia
Published by github-actions[bot] about 3 years ago
SBMLToolkit - v0.1.17
SBMLToolkit v0.1.17
Merged pull requests: - canonize docs (#90) (@ArnoStrouwen) - add logo (#92) (@ArnoStrouwen)
- Julia
Published by github-actions[bot] over 3 years ago
SBMLToolkit - v0.1.16
SBMLToolkit v0.1.16
Merged pull requests: - setup SciML Style (#78) (@ChrisRackauckas) - Pl/use safetests (#79) (@paulflang) - Create SbmlTestSuite.yml (#81) (@paulflang) - add events to reactionsystem by wrapping them in a constraintsystem (#82) (@paulflang) - split into files (#83) (@paulflang) - CompatHelper: bump compat for SBML to 1, (keep existing compat) (#84) (@github-actions[bot]) - MassInstallAction: Install the Invalidations workflow on this repository (#85) (@devmotion) - Update README.md (#86) (@anandijain) - Pl/scimldocs (#87) (@paulflang) - Create Documentation.yml (#88) (@ChrisRackauckas) - Pl/test suite fixes (#89) (@paulflang)
- Julia
Published by github-actions[bot] over 3 years ago
SBMLToolkit - v0.1.15
SBMLToolkit v0.1.15
Merged pull requests: - Pl/constant specs as ps (#72) (@paulflang) - fallback to zero reverse rate (#76) (@paulflang) - Pl/fix assignment rule (#77) (@paulflang)
- Julia
Published by github-actions[bot] over 3 years ago
SBMLToolkit - v0.1.14
SBMLToolkit v0.1.14
Closed issues: - Do we need docs in CI workflow? (#67)
Merged pull requests: - Pl refactor v0.1.13 (#71) (@paulflang) - CompatHelper: bump compat for Catalyst to 12, (keep existing compat) (#73) (@github-actions[bot])
- Julia
Published by github-actions[bot] over 3 years ago
SBMLToolkit - v0.1.13
SBMLToolkit v0.1.13
Merged pull requests: - forced compartment/param fixes (#59) (@anandijain) - fix events and checksupport (#60) (@anandijain)
- Julia
Published by github-actions[bot] about 4 years ago
SBMLToolkit - v0.1.12
SBMLToolkit v0.1.12
Merged pull requests: - fix tests to 0.10 and convert to integer stoich if possible (#58) (@anandijain)
- Julia
Published by github-actions[bot] about 4 years ago
SBMLToolkit - v0.1.11
SBMLToolkit v0.1.11
Merged pull requests: - fix tests (#56) (@anandijain)
- Julia
Published by github-actions[bot] about 4 years ago
SBMLToolkit - v0.1.10
SBMLToolkit v0.1.10
Merged pull requests: - aj/0.9 (#52) (@anandijain) - Rules (#53) (@anandijain) - Rm 0.16 and add 0.19 versions of SymbolicUtils (#55) (@ven-k)
- Julia
Published by github-actions[bot] about 4 years ago
SBMLToolkit - v0.1.9
SBMLToolkit v0.1.9
Merged pull requests: - compat (#48) (@anandijain)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.8
SBMLToolkit v0.1.8
Merged pull requests:
- simplify_fractions in getmassaction (#41) (@anandijain)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.7
SBMLToolkit v0.1.7
Merged pull requests: - Try Catalyst 9 (#39) (@ChrisRackauckas)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.6
SBMLToolkit v0.1.6
Closed issues: - Register (#34)
Merged pull requests: - Update for Catalyst 8, Symbolics 3, MTK 6 (#32) (@ChrisRackauckas)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.5
SBMLToolkit v0.1.5
Merged pull requests: - Pl fix case00696 (#24) (@paulflang) - skip reactions without subs and prods (#25) (@paulflang) - separate out reactants and products for new SBML version (#28) (@anandijain)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.4
SBMLToolkit v0.1.4
Closed issues: - tutorial does not work (#14)
Merged pull requests: - Pl fix argument error (#16) (@paulflang) - Revert "Pl fix argument error" (#17) (@anandijain) - fix default handling (#19) (@anandijain)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.3
SBMLToolkit v0.1.3
Closed issues: - tutorial does not work (#14)
Merged pull requests: - bugfix relops via up sbml (#15) (@paulflang)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.2
SBMLToolkit v0.1.2
Merged pull requests: - Dev (#13) (@paulflang)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.1
SBMLToolkit v0.1.1
Merged pull requests: - Update README.md (#10) (@anandijain) - more readme fixes (#11) (@anandijain) - Update Project.toml (#12) (@anandijain)
- Julia
Published by github-actions[bot] over 4 years ago
SBMLToolkit - v0.1.0
SBMLToolkit v0.1.0
Merged pull requests: - dependencies and get tests running on ci (#1) (@anandijain) - remove String dispatches for MTK constructors (#2) (@anandijain) - CompatHelper: add new compat entry for "Catalyst" at version "6" (#6) (@github-actions[bot]) - CompatHelper: add new compat entry for "SymbolicUtils" at version "0.13" (#7) (@github-actions[bot])
- Julia
Published by github-actions[bot] over 4 years ago