Science Score: 67.0%
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✓CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Keywords
Repository
Gauge-including magnetically induced currents.
Basic Info
- Host: GitHub
- Owner: qmcurrents
- License: gpl-2.0
- Language: Python
- Default Branch: master
- Homepage: https://gimic.readthedocs.io
- Size: 22.6 MB
Statistics
- Stars: 28
- Watchers: 4
- Forks: 19
- Open Issues: 23
- Releases: 2
Topics
Metadata Files
README.md
GIMIC: gauge-including magnetically induced currents
Documentation: https://gimic.readthedocs.io
About GIMIC
The GIMIC program calculates magnetically induced currents in molecules. You need to provide this program with a density matrix in atomic-orbital (AO) basis and three (effective) magnetically perturbed AO density matrices in the proper format.
Currently ACES2, Turbomole, G09, QChem, FERMION++, and LSDalton can produce these matrices.
Example
There is an annotated example input in the examples directory.
Citation
For a recommended code citation, please check the at the bottom-right of https://zenodo.org/record/8180434 (on that page, search for "Cite as"). Also the DOI badge on top of the README links to that page.
When using GIMIC please cite:
J. Juselius, D. Sundholm, J. Gauss, Calculation of Current Densities Using Gauge- Including Atomic Orbitals. J. Chem. Phys. 2004, 121, 3952-3963
H. Fliegl, S. Taubert, O. Lehtonen, D. Sundholm, The Gauge Including Magnetically Induced Current Method. Phys. Chem. Chem. Phys. 2011, 13, 20500-20518
Review:
- D. Sundholm, H. Fliegl, R. J. Berger, Calculations of Magnetically Induced Current Densities: Theory and Applications. WIREs Comput. Mol. Sci. 2016, 6, 639-678
Open-shell calculations:
- S. Taubert, D. Sundholm, J Juselius, Calculation of Spin-Current Densities Using Gauge-Including Atomic Orbitals. J. Chem. Phys. 2011, 134, 054123:1-12
ACID:
- H. Fliegl, J. Jusélius, D. Sundholm, Gauge-Origin Independent Calculations of the Anisotropy of the Magnetically Induced Current Densities, J. Phys. Chem. A, 120, 2016, 5658-5664
When using the G09 interface:
- M. Rauhalahti, S. Taubert, D. Sundholm, V. Liegeois, Calculations of current densities for neutral and doubly charged persubstituted benzenes using ective core potentials. Phys. Chem. Chem. Phys. 2017, 19, 7124-7131
When using the NumGrid libary:
- https://github.com/dftlibs/numgrid#citation
NMR shielding constants based on the current density:
- RK Jinger, H Fliegl, R Bast, M Dimitrova, S Lehtola, D Sundholm, Spatial contributions to nuclear magnetic shieldings, J. Phys. Chem. A, 125, 1778-1786
Magnetizability based on the current density:
- S Lehtola, M Dimitrova, H Fliegl, D Sundholm, Benchmarking magnetizabilities with recent density functionals, J. Chem. Theo. Comp., 17, 1457-1468
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: >-
The gauge including magnetically induced current density
method (GIMIC)
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Jonas
family-names: Juselius
email: jonas.juselius@gmail.com
affiliation: Tromsø
orcid: 'https://orcid.org/0000-0003-4498-3806'
- given-names: Radovan
family-names: Bast
email: radovan.bast@uit.no
affiliation: Tromsø
orcid: 'https://orcid.org/0000-0003-4498-3806'
- given-names: Heike
family-names: Fliegl
email: heike.fliegl@gmail.com
affiliation: Karlsruhe
orcid: 'https://orcid.org/0000-0002-7541-115X'
- given-names: Dage
family-names: Sundholm
email: Dage.Sundholm@chem.helsinki.fi
affiliation: Helsinki
orcid: 'https://orcid.org/0000-0002-2367-9277'
- given-names: Maria
family-names: Dimitrova
email: Maria.Dimitrova@gmail.com
affiliation: Helsinki
orcid: 'https://orcid.org/0000-0002-0711-3484'
- given-names: Lukas
family-names: Wirz
affiliation: Helsinki
orcid: 'https://orcid.org/0000-0002-6577-7166'
- given-names: Vincent
family-names: Liegeois
affiliation: Namur
orcid: 'https://orcid.org/0000-0003-2919-8025'
- given-names: Chandan
family-names: Kumar
affiliation: Munich
- given-names: Thomas
family-names: Kjærgaard
affiliation: Copenhagen
orcid: 'https://orcid.org/0000-0001-5986-5840'
- given-names: Jörg
family-names: Kussmann
email: jkupc@cup.uni-muenchen.de
affiliation: Munich
orcid: 'https://orcid.org/0000-0002-4724-8551'
- given-names: Jaakko
family-names: Pyykkö
affiliation: Helsinki
- given-names: Teemu
family-names: Järvinen
affiliation: Helsinki
orcid: 'https://orcid.org/0000-0001-9234-9071'
- given-names: Jürgen
family-names: Gauss
affiliation: Mainz
orcid: 'https://orcid.org/0000-0002-6432-9345'
repository-code: 'https://github.com/qmcurrents/gimic'
url: 'https://gimic.readthedocs.io/en/latest/'
abstract: >-
The gauge including magnetically induced current method
(GIMIC) is used to obtain magnetically induced current
densities in molecules. It provides detailed information
about electron delocalization, aromatic character, and
current pathways in molecules. GIMIC needs molecular
coordinates, basis set and the atomic orbital density as
well as the first order perturbed density matrices as
input information. It is freely available and interfaced
to several well known quantum chemistry software packages
like for example Turbomole. Based on Gimic output
information it is possible to visualize the current
density with the ParaView software package. Beside the
current density it is possible to obtain nuclear magnetic
shieldings as well as magnetizability information with
GIMIC. For this purpose the program has been interfaced to
the NumGrid library, which provides optimized atomic grids
for accurate numerical calculations.
keywords:
- magnetically induced current density
- aromaticity
- integration
- numerical methods
- London orbitals
license: GPL-2.0
version: '2.2.1'
date-released: '2023-07-25'
GitHub Events
Total
- Issues event: 1
- Pull request event: 1
- Fork event: 2
Last Year
- Issues event: 1
- Pull request event: 1
- Fork event: 2
Packages
- Total packages: 1
- Total downloads: unknown
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 2
proxy.golang.org: github.com/qmcurrents/gimic
- Documentation: https://pkg.go.dev/github.com/qmcurrents/gimic#section-documentation
- License: gpl-2.0
-
Latest release: v2.2.1+incompatible
published over 2 years ago
Rankings
Dependencies
- cython *
- numpy *
- pyparsing ==2.4.7
- pyyaml *
- runtest ==2.3.2
- sphinx *
- sphinx_rtd_theme *
- actions/checkout v2 composite
- actions/setup-python v1 composite
- actions/checkout v2 composite
- actions/setup-python v1 composite
- actions/checkout v3 composite
- dieghernan/cff-validator main composite