breastcanceratlasextension
Science Score: 57.0%
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✓DOI references
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○Scientific vocabulary similarity
Low similarity (9.4%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Basic Info
- Host: GitHub
- Owner: jsit433
- Language: Python
- Default Branch: master
- Size: 37.9 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 2 years ago
· Last pushed 12 months ago
Metadata Files
Readme
Citation
README.md
Breast Cancer Atlas Extension
This extension interactively visualises an anatomical and statistical lymph node atlas of the breast developed using SPECT/CT data. Development of the atlas has been published in Cancer Imaging and can be accessed at the following link: https://doi.org/10.1186/s40644-024-00738-z
If you utilise this 3D atlas in your own work, please ensure you cite the article as follows:
Situ, J., Buissink, P., Mu, A. et al. An interactive 3D atlas of sentinel lymph nodes in breast cancer developed using SPECT/CT. Cancer Imaging 24, 97 (2024).
Installation Instructions
- Download the folder 'BreastCancerAtlasExtension' by selecting the green 'Code' button > Download ZIP. Unzip the folder and then save this anywhere you like, but please save it somewhere you can access in a later step.
- Download and install 3D Slicer version 5.2.2 (https://download.slicer.org/?version=5.2.2).
- Start 3D Slicer.
- Under the module selection tab labelled Welcome to Slicer select Developer Tools > Extension Wizard.
- Click 'Select Extension'.
- Locate the unzipped BreastCancerAtlasExtension-master folder from where you saved it earlier. Ensure the folder you select contains a 'BreastCancerAtlas' folder (you may have to double click twice on 'BreastCancerAtlasExtension-master'). Deselect Enable developer mode. If it asks you to install command line developer tools please do so.
- After pressing 'Yes', close Slicer and then reopen it.
- The module should load when Slicer is reopened.
- If the information and options in the left control panel do not immediately appear, under the module selection tab labelled 'Welcome to Slicer' select Custom Modules > BreastCancerAtlas
- You can read through the information and change visibility of different atlas components and the statistical analysis type as you prefer.
Owner
- Name: Josephine Situ
- Login: jsit433
- Kind: user
- Repositories: 1
- Profile: https://github.com/jsit433
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: Breast Cancer Atlas
message: >-
If you utilise this 3D atlas in your own work, please
ensure you cite the article as follows.
type: software
authors:
- given-names: Josephine
family-names: Situ
- given-names: Poppy
family-names: Buissink
- given-names: Annie
family-names: Mu
- given-names: David
name-particle: K. V.
family-names: Chung
- given-names: Rob
family-names: Finnegan
- given-names: Thiranja P. Babarenda
family-names: Gamage
- given-names: Tharanga
name-particle: D.
family-names: Jayathungage Don
- given-names: Cameron
family-names: Walker
- given-names: Hayley
name-particle: M.
family-names: Reynolds
identifiers:
- type: doi
value: 10.1186/s40644-024-00738-z
repository-code: 'https://github.com/jsit433/BreastCancerAtlasExtension'
preferred-citation:
type: article
authors:
- given-names: Josephine
family-names: Situ
- given-names: Poppy
family-names: Buissink
- given-names: Annie
family-names: Mu
- given-names: David
name-particle: K. V.
family-names: Chung
- given-names: Rob
family-names: Finnegan
- given-names: Thiranja P. Babarenda
family-names: Gamage
- given-names: Tharanga
name-particle: D.
family-names: Jayathungage Don
- given-names: Cameron
family-names: Walker
- given-names: Hayley
name-particle: M.
family-names: Reynolds
doi: "10.1186/s40644-024-00738-z"
journal: "Cancer Imaging"
title: "An interactive 3D atlas of sentinel lymph nodes in breast cancer developed using SPECT/CT"
issue: 1
volume: 24
start: 97
year: 2024
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