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Open Source Science

https://github.com/lczech/nidhoggr

Snakemake pipeline to run phylogenetic tree inferences

https://github.com/lczech/nidhoggr

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.6%) to scientific vocabulary

Keywords from Contributors

phylogenetic-placement
Last synced: 6 months ago · JSON representation

Repository

Snakemake pipeline to run phylogenetic tree inferences

Basic Info
  • Host: GitHub
  • Owner: lczech
  • License: gpl-3.0
  • Language: Python
  • Default Branch: master
  • Size: 86.9 KB
Statistics
  • Stars: 7
  • Watchers: 3
  • Forks: 2
  • Open Issues: 0
  • Releases: 1
Created almost 6 years ago · Last pushed about 4 years ago
Metadata Files
Readme License

README.md

nidhoggr

nidhoggr is a snakemake pipeline to run phylogenetic tree inferences.

Owner

  • Name: Lucas Czech
  • Login: lczech
  • Kind: user
  • Location: Stanford, USA
  • Company: Carnegie Institution for Science

Postdoc in bioinformatics :seedling: and computer scientist :octocat: working on inter-disciplinary ways to save the planet :earth_africa:

GitHub Events

Total
  • Watch event: 2
Last Year
  • Watch event: 2

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 36
  • Total Committers: 2
  • Avg Commits per committer: 18.0
  • Development Distribution Score (DDS): 0.194
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Pierre Barbera p****s@g****m 29
Lucas Czech l****c@s****h 7
Committer Domains (Top 20 + Academic)
s-cze.ch: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 0
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Dependencies

environment.yaml conda
  • pandas 1.4.0
  • snakemake 6.15.5
Dockerfile docker
  • ubuntu 18.04 build